Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.27■□□□□ 0.2
GFRA3O60609 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
GFRA3O60609 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
GFRA3O60609 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
GFRA3O60609 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
GFRA3O60609 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
GFRA3O60609 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
GFRA3O60609 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.27■□□□□ 0.19
GFRA3O60609 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
GFRA3O60609 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.27■□□□□ 0.19
GFRA3O60609 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.27■□□□□ 0.19
GFRA3O60609 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
GFRA3O60609 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.26■□□□□ 0.19
GFRA3O60609 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
GFRA3O60609 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
GFRA3O60609 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 EIF4HP1-201ENST00000453115 687 ntBASIC16.26■□□□□ 0.19
GFRA3O60609 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.26■□□□□ 0.19
GFRA3O60609 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.26■□□□□ 0.19
GFRA3O60609 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
GFRA3O60609 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
GFRA3O60609 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
GFRA3O60609 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.26■□□□□ 0.19
GFRA3O60609 AP001350.2-201ENST00000625104 1094 ntBASIC16.26■□□□□ 0.19
GFRA3O60609 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.26■□□□□ 0.19
GFRA3O60609 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.26■□□□□ 0.19
GFRA3O60609 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
GFRA3O60609 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.26■□□□□ 0.19
GFRA3O60609 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.26■□□□□ 0.19
GFRA3O60609 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.26■□□□□ 0.19
GFRA3O60609 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
GFRA3O60609 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 FLJ13224-201ENST00000313737 1514 ntBASIC16.25■□□□□ 0.19
GFRA3O60609 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
GFRA3O60609 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC16.25■□□□□ 0.19
GFRA3O60609 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.25■□□□□ 0.19
GFRA3O60609 BCRP2-202ENST00000447763 634 ntBASIC16.25■□□□□ 0.19
GFRA3O60609 MTND4LP12-201ENST00000448237 295 ntBASIC16.25■□□□□ 0.19
GFRA3O60609 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.25■□□□□ 0.19
GFRA3O60609 BCRP6-201ENST00000510112 632 ntBASIC16.25■□□□□ 0.19
GFRA3O60609 BCRP7-201ENST00000511549 544 ntBASIC16.25■□□□□ 0.19
GFRA3O60609 RNA5SP410-201ENST00000516285 106 ntBASIC16.25■□□□□ 0.19
GFRA3O60609 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.25■□□□□ 0.19
GFRA3O60609 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.25■□□□□ 0.19
GFRA3O60609 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
GFRA3O60609 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.25■□□□□ 0.19
GFRA3O60609 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.25■□□□□ 0.19
GFRA3O60609 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
GFRA3O60609 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.25■□□□□ 0.19
GFRA3O60609 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.25■□□□□ 0.19
GFRA3O60609 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 EGFEM1P-202ENST00000431685 1563 ntBASIC16.25■□□□□ 0.19
GFRA3O60609 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
GFRA3O60609 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
GFRA3O60609 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
GFRA3O60609 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.24■□□□□ 0.19
GFRA3O60609 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.24■□□□□ 0.19
GFRA3O60609 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
GFRA3O60609 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms