Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CLDN3O15551 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.51■□□□□ 0.55
CLDN3O15551 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.51■□□□□ 0.55
CLDN3O15551 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 AC023141.13-201ENST00000604991 943 ntBASIC18.51■□□□□ 0.55
CLDN3O15551 AC004877.2-201ENST00000623941 599 ntBASIC18.51■□□□□ 0.55
CLDN3O15551 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CLDN3O15551 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CLDN3O15551 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.51■□□□□ 0.55
CLDN3O15551 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CLDN3O15551 BCAR1-209ENST00000546196 1340 ntBASIC18.5■□□□□ 0.55
CLDN3O15551 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CLDN3O15551 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 AC002347.1-201ENST00000569543 541 ntBASIC18.5■□□□□ 0.55
CLDN3O15551 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.5■□□□□ 0.55
CLDN3O15551 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN3O15551 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN3O15551 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
CLDN3O15551 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN3O15551 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CLDN3O15551 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.49■□□□□ 0.55
CLDN3O15551 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.49■□□□□ 0.55
CLDN3O15551 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 KRT8P49-201ENST00000604166 1432 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
CLDN3O15551 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CLDN3O15551 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLDN3O15551 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.49■□□□□ 0.55
CLDN3O15551 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.49■□□□□ 0.55
CLDN3O15551 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CLDN3O15551 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.49■□□□□ 0.55
CLDN3O15551 AC005412.3-201ENST00000580309 715 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 AL513190.1-201ENST00000621254 727 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 AC092865.6-201ENST00000642101 219 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CLDN3O15551 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN3O15551 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.49■□□□□ 0.55
CLDN3O15551 AC025580.3-201ENST00000617932 1424 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 TUBB8P12-201ENST00000308911 1335 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 TUBB7P-202ENST00000428444 1305 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 TUBB8P7-204ENST00000567960 1332 ntBASIC18.49■□□□□ 0.55
CLDN3O15551 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN3O15551 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.48■□□□□ 0.55
CLDN3O15551 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN3O15551 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.48■□□□□ 0.55
CLDN3O15551 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN3O15551 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN3O15551 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN3O15551 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CLDN3O15551 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN3O15551 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.48■□□□□ 0.55
CLDN3O15551 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.48■□□□□ 0.55
CLDN3O15551 AC004832.2-201ENST00000426397 482 ntBASIC18.48■□□□□ 0.55
CLDN3O15551 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CLDN3O15551 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CLDN3O15551 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.48■□□□□ 0.55
CLDN3O15551 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN3O15551 KRT19P2-202ENST00000557173 1012 ntBASIC18.48■□□□□ 0.55
CLDN3O15551 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.48■□□□□ 0.55
CLDN3O15551 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.48■□□□□ 0.55
CLDN3O15551 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.48■□□□□ 0.55
CLDN3O15551 AC060834.1-201ENST00000443027 2032 ntBASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms