Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC3O15379 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HDAC3O15379 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HDAC3O15379 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HDAC3O15379 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 ACTG1P4-201ENST00000425123 1122 ntBASIC16.53■□□□□ 0.24
HDAC3O15379 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.53■□□□□ 0.24
HDAC3O15379 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.53■□□□□ 0.24
HDAC3O15379 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.53■□□□□ 0.24
HDAC3O15379 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.53■□□□□ 0.24
HDAC3O15379 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC3O15379 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.53■□□□□ 0.24
HDAC3O15379 AC097493.4-201ENST00000641197 219 ntBASIC16.53■□□□□ 0.24
HDAC3O15379 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HDAC3O15379 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
HDAC3O15379 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HDAC3O15379 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC3O15379 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC3O15379 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC3O15379 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC3O15379 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC3O15379 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC3O15379 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC3O15379 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC3O15379 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.52■□□□□ 0.24
HDAC3O15379 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC3O15379 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.52■□□□□ 0.24
HDAC3O15379 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC3O15379 AC006011.2-201ENST00000621313 1158 ntBASIC16.52■□□□□ 0.24
HDAC3O15379 AC133561.5-201ENST00000635547 218 ntBASIC16.52■□□□□ 0.24
HDAC3O15379 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC3O15379 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC3O15379 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC3O15379 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.23
HDAC3O15379 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
HDAC3O15379 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 AL596257.1-201ENST00000641463 2694 ntBASIC16.52■□□□□ 0.23
HDAC3O15379 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC3O15379 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.51■□□□□ 0.23
HDAC3O15379 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.51■□□□□ 0.23
HDAC3O15379 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.51■□□□□ 0.23
HDAC3O15379 AC024909.3-201ENST00000611513 2257 ntBASIC16.51■□□□□ 0.23
HDAC3O15379 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC3O15379 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
HDAC3O15379 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms