Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC24.41■■□□□ 1.5
LRRC40Q9H9A6 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
LRRC40Q9H9A6 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
LRRC40Q9H9A6 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.4■■□□□ 1.5
LRRC40Q9H9A6 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC40Q9H9A6 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC40Q9H9A6 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
LRRC40Q9H9A6 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRRC40Q9H9A6 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
LRRC40Q9H9A6 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
LRRC40Q9H9A6 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.5
LRRC40Q9H9A6 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.39■■□□□ 1.49
LRRC40Q9H9A6 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 GPX1-201ENST00000419349 1106 ntBASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.38■■□□□ 1.49
LRRC40Q9H9A6 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC40Q9H9A6 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC40Q9H9A6 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRRC40Q9H9A6 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.37■■□□□ 1.49
LRRC40Q9H9A6 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 RP9P-202ENST00000450133 1212 ntBASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
LRRC40Q9H9A6 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.35■■□□□ 1.49
LRRC40Q9H9A6 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC40Q9H9A6 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.35■■□□□ 1.49
LRRC40Q9H9A6 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC40Q9H9A6 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC24.35■■□□□ 1.49
LRRC40Q9H9A6 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
LRRC40Q9H9A6 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
LRRC40Q9H9A6 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
LRRC40Q9H9A6 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
LRRC40Q9H9A6 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
LRRC40Q9H9A6 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
LRRC40Q9H9A6 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.49
LRRC40Q9H9A6 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
LRRC40Q9H9A6 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.33■■□□□ 1.49
LRRC40Q9H9A6 AC007029.1-201ENST00000604183 313 ntBASIC24.33■■□□□ 1.49
LRRC40Q9H9A6 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC24.33■■□□□ 1.49
LRRC40Q9H9A6 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
LRRC40Q9H9A6 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.32■■□□□ 1.48
LRRC40Q9H9A6 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
LRRC40Q9H9A6 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
LRRC40Q9H9A6 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
LRRC40Q9H9A6 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC40Q9H9A6 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC40Q9H9A6 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
LRRC40Q9H9A6 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.31■■□□□ 1.48
LRRC40Q9H9A6 AC093536.1-201ENST00000569153 554 ntBASIC24.31■■□□□ 1.48
LRRC40Q9H9A6 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.31■■□□□ 1.48
LRRC40Q9H9A6 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRRC40Q9H9A6 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC40Q9H9A6 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC40Q9H9A6 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRRC40Q9H9A6 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
LRRC40Q9H9A6 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.28■■□□□ 1.48
LRRC40Q9H9A6 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
LRRC40Q9H9A6 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
LRRC40Q9H9A6 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
LRRC40Q9H9A6 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
LRRC40Q9H9A6 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.28■■□□□ 1.48
LRRC40Q9H9A6 AC097639.1-201ENST00000565519 1891 ntBASIC24.28■■□□□ 1.48
LRRC40Q9H9A6 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
LRRC40Q9H9A6 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
LRRC40Q9H9A6 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.27■■□□□ 1.48
LRRC40Q9H9A6 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.27■■□□□ 1.48
LRRC40Q9H9A6 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
LRRC40Q9H9A6 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
LRRC40Q9H9A6 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
LRRC40Q9H9A6 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
LRRC40Q9H9A6 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.25■■□□□ 1.47
LRRC40Q9H9A6 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms