Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIME1Q9H400 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LIME1Q9H400 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIME1Q9H400 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIME1Q9H400 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LIME1Q9H400 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIME1Q9H400 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIME1Q9H400 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.15■□□□□ 0.98
LIME1Q9H400 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIME1Q9H400 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.15■□□□□ 0.98
LIME1Q9H400 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIME1Q9H400 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.15■□□□□ 0.98
LIME1Q9H400 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIME1Q9H400 AL031848.2-201ENST00000607670 837 ntBASIC21.15■□□□□ 0.98
LIME1Q9H400 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LIME1Q9H400 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIME1Q9H400 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.15■□□□□ 0.98
LIME1Q9H400 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIME1Q9H400 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIME1Q9H400 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIME1Q9H400 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.14■□□□□ 0.97
LIME1Q9H400 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIME1Q9H400 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIME1Q9H400 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIME1Q9H400 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIME1Q9H400 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LIME1Q9H400 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LIME1Q9H400 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
LIME1Q9H400 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.12■□□□□ 0.97
LIME1Q9H400 MIR935-201ENST00000401179 91 ntBASIC21.12■□□□□ 0.97
LIME1Q9H400 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.12■□□□□ 0.97
LIME1Q9H400 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.12■□□□□ 0.97
LIME1Q9H400 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIME1Q9H400 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIME1Q9H400 AP002414.2-202ENST00000590929 1450 ntBASIC21.12■□□□□ 0.97
LIME1Q9H400 AL449106.1-201ENST00000608517 1980 ntBASIC21.12■□□□□ 0.97
LIME1Q9H400 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIME1Q9H400 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIME1Q9H400 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIME1Q9H400 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIME1Q9H400 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.11■□□□□ 0.97
LIME1Q9H400 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LIME1Q9H400 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIME1Q9H400 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.1■□□□□ 0.97
LIME1Q9H400 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.1■□□□□ 0.97
LIME1Q9H400 AC239859.2-201ENST00000444165 318 ntBASIC21.1■□□□□ 0.97
LIME1Q9H400 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
LIME1Q9H400 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.09■□□□□ 0.97
LIME1Q9H400 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIME1Q9H400 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.09■□□□□ 0.97
LIME1Q9H400 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.09■□□□□ 0.97
LIME1Q9H400 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIME1Q9H400 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.08■□□□□ 0.97
LIME1Q9H400 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIME1Q9H400 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIME1Q9H400 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.08■□□□□ 0.97
LIME1Q9H400 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.08■□□□□ 0.96
LIME1Q9H400 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIME1Q9H400 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.07■□□□□ 0.96
LIME1Q9H400 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIME1Q9H400 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.07■□□□□ 0.96
LIME1Q9H400 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIME1Q9H400 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.06■□□□□ 0.96
LIME1Q9H400 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIME1Q9H400 AL359504.2-201ENST00000605506 1601 ntBASIC21.06■□□□□ 0.96
LIME1Q9H400 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.06■□□□□ 0.96
LIME1Q9H400 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIME1Q9H400 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIME1Q9H400 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIME1Q9H400 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.05■□□□□ 0.96
LIME1Q9H400 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIME1Q9H400 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIME1Q9H400 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIME1Q9H400 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIME1Q9H400 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIME1Q9H400 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIME1Q9H400 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
LIME1Q9H400 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIME1Q9H400 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIME1Q9H400 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.04■□□□□ 0.96
LIME1Q9H400 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.04■□□□□ 0.96
LIME1Q9H400 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
LIME1Q9H400 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIME1Q9H400 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIME1Q9H400 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
LIME1Q9H400 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIME1Q9H400 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LIME1Q9H400 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LIME1Q9H400 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.03■□□□□ 0.96
LIME1Q9H400 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LIME1Q9H400 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIME1Q9H400 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIME1Q9H400 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIME1Q9H400 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIME1Q9H400 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIME1Q9H400 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.01■□□□□ 0.95
LIME1Q9H400 AC008406.3-201ENST00000620001 1374 ntBASIC21.01■□□□□ 0.95
LIME1Q9H400 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIME1Q9H400 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LIME1Q9H400 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms