Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SSX3Q99909 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.89■□□□□ 0.77
SSX3Q99909 BX255925.1-201ENST00000566954 1854 ntBASIC19.89■□□□□ 0.77
SSX3Q99909 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX3Q99909 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.88■□□□□ 0.77
SSX3Q99909 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX3Q99909 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX3Q99909 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.88■□□□□ 0.77
SSX3Q99909 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SSX3Q99909 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SSX3Q99909 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SSX3Q99909 AC025884.2-201ENST00000553429 711 ntBASIC19.87■□□□□ 0.77
SSX3Q99909 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX3Q99909 LINC01003-201ENST00000564834 1764 ntBASIC19.87■□□□□ 0.77
SSX3Q99909 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX3Q99909 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SSX3Q99909 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.86■□□□□ 0.77
SSX3Q99909 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.86■□□□□ 0.77
SSX3Q99909 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX3Q99909 AC012354.3-201ENST00000623734 483 ntBASIC19.86■□□□□ 0.77
SSX3Q99909 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.86■□□□□ 0.77
SSX3Q99909 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX3Q99909 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX3Q99909 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SSX3Q99909 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX3Q99909 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX3Q99909 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.85■□□□□ 0.77
SSX3Q99909 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.85■□□□□ 0.77
SSX3Q99909 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.85■□□□□ 0.77
SSX3Q99909 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSX3Q99909 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX3Q99909 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.85■□□□□ 0.77
SSX3Q99909 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX3Q99909 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX3Q99909 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSX3Q99909 AC093323.1-202ENST00000635031 2045 ntBASIC19.85■□□□□ 0.77
SSX3Q99909 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX3Q99909 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX3Q99909 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX3Q99909 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX3Q99909 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX3Q99909 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX3Q99909 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX3Q99909 RP9P-202ENST00000450133 1212 ntBASIC19.83■□□□□ 0.77
SSX3Q99909 AC133552.2-201ENST00000619106 1032 ntBASIC19.83■□□□□ 0.77
SSX3Q99909 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
SSX3Q99909 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SSX3Q99909 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SSX3Q99909 AL359504.2-201ENST00000605506 1601 ntBASIC19.83■□□□□ 0.76
SSX3Q99909 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
SSX3Q99909 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSX3Q99909 AC020928.2-201ENST00000588717 2197 ntBASIC19.83■□□□□ 0.76
SSX3Q99909 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.83■□□□□ 0.76
SSX3Q99909 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSX3Q99909 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.83■□□□□ 0.76
SSX3Q99909 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX3Q99909 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.82■□□□□ 0.76
SSX3Q99909 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX3Q99909 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
SSX3Q99909 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.82■□□□□ 0.76
SSX3Q99909 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX3Q99909 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX3Q99909 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSX3Q99909 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SSX3Q99909 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX3Q99909 KRT18P60-201ENST00000312876 1297 ntBASIC19.81■□□□□ 0.76
SSX3Q99909 MIR3960-201ENST00000583311 91 ntBASIC19.81■□□□□ 0.76
SSX3Q99909 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SSX3Q99909 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.81■□□□□ 0.76
SSX3Q99909 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX3Q99909 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX3Q99909 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SSX3Q99909 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SSX3Q99909 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSX3Q99909 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSX3Q99909 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.8■□□□□ 0.76
SSX3Q99909 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SSX3Q99909 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSX3Q99909 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.8■□□□□ 0.76
SSX3Q99909 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SSX3Q99909 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SSX3Q99909 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SSX3Q99909 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.8■□□□□ 0.76
SSX3Q99909 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.79■□□□□ 0.76
SSX3Q99909 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SSX3Q99909 AC009831.1-201ENST00000580420 1582 ntBASIC19.79■□□□□ 0.76
SSX3Q99909 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SSX3Q99909 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SSX3Q99909 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SSX3Q99909 AC093536.1-201ENST00000569153 554 ntBASIC19.79■□□□□ 0.76
SSX3Q99909 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.79■□□□□ 0.76
SSX3Q99909 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SSX3Q99909 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SSX3Q99909 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SSX3Q99909 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SSX3Q99909 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SSX3Q99909 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.78■□□□□ 0.76
SSX3Q99909 AC026202.3-201ENST00000600805 1127 ntBASIC19.78■□□□□ 0.76
SSX3Q99909 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SSX3Q99909 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms