Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CDX2Q99626 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CDX2Q99626 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC25.9■■□□□ 1.74
CDX2Q99626 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CDX2Q99626 WHAMMP3-201ENST00000611636 1609 ntBASIC25.9■■□□□ 1.74
CDX2Q99626 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.9■■□□□ 1.74
CDX2Q99626 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CDX2Q99626 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.9■■□□□ 1.74
CDX2Q99626 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
CDX2Q99626 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.9■■□□□ 1.74
CDX2Q99626 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.9■■□□□ 1.74
CDX2Q99626 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CDX2Q99626 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.89■■□□□ 1.74
CDX2Q99626 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CDX2Q99626 MIR6821-201ENST00000617625 74 ntBASIC25.89■■□□□ 1.74
CDX2Q99626 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CDX2Q99626 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC25.88■■□□□ 1.73
CDX2Q99626 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.88■■□□□ 1.73
CDX2Q99626 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.87■■□□□ 1.73
CDX2Q99626 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
CDX2Q99626 AL162430.1-201ENST00000480705 870 ntBASIC25.86■■□□□ 1.73
CDX2Q99626 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC25.86■■□□□ 1.73
CDX2Q99626 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.86■■□□□ 1.73
CDX2Q99626 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.86■■□□□ 1.73
CDX2Q99626 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CDX2Q99626 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.85■■□□□ 1.73
CDX2Q99626 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC25.85■■□□□ 1.73
CDX2Q99626 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CDX2Q99626 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CDX2Q99626 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC25.85■■□□□ 1.73
CDX2Q99626 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CDX2Q99626 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.84■■□□□ 1.73
CDX2Q99626 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
CDX2Q99626 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CDX2Q99626 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CDX2Q99626 UNC93B3-201ENST00000308076 687 ntBASIC25.84■■□□□ 1.73
CDX2Q99626 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.84■■□□□ 1.73
CDX2Q99626 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CDX2Q99626 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.83■■□□□ 1.73
CDX2Q99626 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.83■■□□□ 1.73
CDX2Q99626 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CDX2Q99626 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.72
CDX2Q99626 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC25.82■■□□□ 1.72
CDX2Q99626 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.82■■□□□ 1.72
CDX2Q99626 AC105265.2-201ENST00000467189 838 ntBASIC25.82■■□□□ 1.72
CDX2Q99626 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.82■■□□□ 1.72
CDX2Q99626 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.82■■□□□ 1.72
CDX2Q99626 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CDX2Q99626 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CDX2Q99626 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CDX2Q99626 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.81■■□□□ 1.72
CDX2Q99626 AC097381.1-201ENST00000429019 1296 ntBASIC25.81■■□□□ 1.72
CDX2Q99626 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.81■■□□□ 1.72
CDX2Q99626 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.8■■□□□ 1.72
CDX2Q99626 KRT18P10-201ENST00000388836 1287 ntBASIC25.8■■□□□ 1.72
CDX2Q99626 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.8■■□□□ 1.72
CDX2Q99626 MIR4281-201ENST00000580852 62 ntBASIC25.8■■□□□ 1.72
CDX2Q99626 AL136162.1-201ENST00000607711 1078 ntBASIC25.8■■□□□ 1.72
CDX2Q99626 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.8■■□□□ 1.72
CDX2Q99626 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
CDX2Q99626 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.79■■□□□ 1.72
CDX2Q99626 AC090192.1-201ENST00000517740 490 ntBASIC25.79■■□□□ 1.72
CDX2Q99626 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CDX2Q99626 AC087623.3-201ENST00000607047 1098 ntBASIC25.78■■□□□ 1.72
CDX2Q99626 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CDX2Q99626 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CDX2Q99626 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.77■■□□□ 1.72
CDX2Q99626 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CDX2Q99626 AL355001.2-201ENST00000620617 1191 ntBASIC25.77■■□□□ 1.72
CDX2Q99626 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.77■■□□□ 1.72
CDX2Q99626 EDA-201ENST00000338901 1233 ntBASIC25.76■■□□□ 1.71
CDX2Q99626 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC25.76■■□□□ 1.71
CDX2Q99626 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
CDX2Q99626 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.75■■□□□ 1.71
CDX2Q99626 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.75■■□□□ 1.71
CDX2Q99626 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
CDX2Q99626 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CDX2Q99626 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CDX2Q99626 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CDX2Q99626 RARRES2P11-201ENST00000635158 484 ntBASIC25.75■■□□□ 1.71
CDX2Q99626 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
CDX2Q99626 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.74■■□□□ 1.71
CDX2Q99626 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CDX2Q99626 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.74■■□□□ 1.71
CDX2Q99626 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CDX2Q99626 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.74■■□□□ 1.71
CDX2Q99626 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.73■■□□□ 1.71
CDX2Q99626 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
CDX2Q99626 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
CDX2Q99626 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
CDX2Q99626 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.73■■□□□ 1.71
CDX2Q99626 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.73■■□□□ 1.71
CDX2Q99626 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.72■■□□□ 1.71
CDX2Q99626 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.72■■□□□ 1.71
CDX2Q99626 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
CDX2Q99626 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CDX2Q99626 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CDX2Q99626 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
CDX2Q99626 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.71■■□□□ 1.71
CDX2Q99626 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms