Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VPS35Q96QK1 MIR6765-201ENST00000614092 87 ntBASIC23.86■■□□□ 1.41
VPS35Q96QK1 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS35Q96QK1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.86■■□□□ 1.41
VPS35Q96QK1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS35Q96QK1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS35Q96QK1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS35Q96QK1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS35Q96QK1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS35Q96QK1 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS35Q96QK1 KRT18P10-201ENST00000388836 1287 ntBASIC23.85■■□□□ 1.41
VPS35Q96QK1 AC004987.1-201ENST00000428627 508 ntBASIC23.85■■□□□ 1.41
VPS35Q96QK1 ATP5G2P3-201ENST00000429083 425 ntBASIC23.85■■□□□ 1.41
VPS35Q96QK1 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.85■■□□□ 1.41
VPS35Q96QK1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS35Q96QK1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
VPS35Q96QK1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
VPS35Q96QK1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.84■■□□□ 1.41
VPS35Q96QK1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
VPS35Q96QK1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.84■■□□□ 1.41
VPS35Q96QK1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.83■■□□□ 1.41
VPS35Q96QK1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
VPS35Q96QK1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS35Q96QK1 TSPY13P-201ENST00000338964 914 ntBASIC23.83■■□□□ 1.41
VPS35Q96QK1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VPS35Q96QK1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC23.83■■□□□ 1.41
VPS35Q96QK1 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VPS35Q96QK1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS35Q96QK1 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.4
VPS35Q96QK1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.4
VPS35Q96QK1 AC010501.1-201ENST00000606270 1962 ntBASIC23.82■■□□□ 1.4
VPS35Q96QK1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.82■■□□□ 1.4
VPS35Q96QK1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS35Q96QK1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
VPS35Q96QK1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.82■■□□□ 1.4
VPS35Q96QK1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS35Q96QK1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.82■■□□□ 1.4
VPS35Q96QK1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
VPS35Q96QK1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS35Q96QK1 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS35Q96QK1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS35Q96QK1 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.81■■□□□ 1.4
VPS35Q96QK1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
VPS35Q96QK1 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS35Q96QK1 AC091060.1-201ENST00000623524 1766 ntBASIC23.8■■□□□ 1.4
VPS35Q96QK1 ERN1-208ENST00000606895 2068 ntBASIC23.8■■□□□ 1.4
VPS35Q96QK1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS35Q96QK1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS35Q96QK1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VPS35Q96QK1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.8■■□□□ 1.4
VPS35Q96QK1 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS35Q96QK1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.8■■□□□ 1.4
VPS35Q96QK1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.8■■□□□ 1.4
VPS35Q96QK1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.8■■□□□ 1.4
VPS35Q96QK1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
VPS35Q96QK1 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.79■■□□□ 1.4
VPS35Q96QK1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VPS35Q96QK1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS35Q96QK1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS35Q96QK1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS35Q96QK1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC23.79■■□□□ 1.4
VPS35Q96QK1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC23.79■■□□□ 1.4
VPS35Q96QK1 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.79■■□□□ 1.4
VPS35Q96QK1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS35Q96QK1 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS35Q96QK1 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS35Q96QK1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.78■■□□□ 1.4
VPS35Q96QK1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS35Q96QK1 DUSP8P4-201ENST00000399538 1761 ntBASIC23.78■■□□□ 1.4
VPS35Q96QK1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.78■■□□□ 1.4
VPS35Q96QK1 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS35Q96QK1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS35Q96QK1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS35Q96QK1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
VPS35Q96QK1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS35Q96QK1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS35Q96QK1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS35Q96QK1 AC145676.1-201ENST00000514988 2004 ntBASIC23.77■■□□□ 1.4
VPS35Q96QK1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS35Q96QK1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
VPS35Q96QK1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.76■■□□□ 1.39
VPS35Q96QK1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.76■■□□□ 1.39
VPS35Q96QK1 DUX4L18-201ENST00000553347 1267 ntBASIC23.76■■□□□ 1.39
VPS35Q96QK1 AL033527.3-201ENST00000566366 1196 ntBASIC23.76■■□□□ 1.39
VPS35Q96QK1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VPS35Q96QK1 AC135731.1-201ENST00000569415 2548 ntBASIC23.75■■□□□ 1.39
VPS35Q96QK1 AC096887.2-201ENST00000623443 1957 ntBASIC23.75■■□□□ 1.39
VPS35Q96QK1 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS35Q96QK1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.74■■□□□ 1.39
VPS35Q96QK1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS35Q96QK1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS35Q96QK1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.74■■□□□ 1.39
VPS35Q96QK1 RPS2P7-201ENST00000447334 885 ntBASIC23.74■■□□□ 1.39
VPS35Q96QK1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS35Q96QK1 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS35Q96QK1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS35Q96QK1 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS35Q96QK1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS35Q96QK1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS35Q96QK1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms