Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RPS28P62857 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPS28P62857 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC14.24□□□□□ -0.13
RPS28P62857 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC14.24□□□□□ -0.13
RPS28P62857 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPS28P62857 DUSP8P3-201ENST00000399571 1760 ntBASIC14.24□□□□□ -0.13
RPS28P62857 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPS28P62857 AC073130.3-201ENST00000624389 2278 ntBASIC14.24□□□□□ -0.13
RPS28P62857 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPS28P62857 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RPS28P62857 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPS28P62857 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPS28P62857 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
RPS28P62857 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC14.23□□□□□ -0.13
RPS28P62857 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPS28P62857 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPS28P62857 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPS28P62857 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RPS28P62857 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPS28P62857 DUSP8P4-201ENST00000399538 1761 ntBASIC14.22□□□□□ -0.13
RPS28P62857 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
RPS28P62857 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC14.22□□□□□ -0.13
RPS28P62857 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
RPS28P62857 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPS28P62857 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.22□□□□□ -0.13
RPS28P62857 AL139125.2-201ENST00000623134 1869 ntBASIC14.22□□□□□ -0.13
RPS28P62857 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC14.22□□□□□ -0.13
RPS28P62857 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RPS28P62857 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RPS28P62857 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RPS28P62857 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RPS28P62857 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RPS28P62857 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
RPS28P62857 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RPS28P62857 EP400NL-214ENST00000641289 2402 ntBASIC14.2□□□□□ -0.14
RPS28P62857 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RPS28P62857 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RPS28P62857 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
RPS28P62857 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RPS28P62857 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPS28P62857 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPS28P62857 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPS28P62857 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
RPS28P62857 AC007375.3-201ENST00000600936 2314 ntBASIC14.19□□□□□ -0.14
RPS28P62857 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPS28P62857 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
RPS28P62857 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RPS28P62857 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RPS28P62857 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPS28P62857 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPS28P62857 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPS28P62857 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPS28P62857 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPS28P62857 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPS28P62857 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPS28P62857 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC14.17□□□□□ -0.14
RPS28P62857 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPS28P62857 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
RPS28P62857 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC14.17□□□□□ -0.14
RPS28P62857 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC14.17□□□□□ -0.14
RPS28P62857 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RPS28P62857 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPS28P62857 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC14.16□□□□□ -0.14
RPS28P62857 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 LINC01003-201ENST00000564834 1764 ntBASIC14.16□□□□□ -0.14
RPS28P62857 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC14.16□□□□□ -0.14
RPS28P62857 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPS28P62857 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
RPS28P62857 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPS28P62857 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPS28P62857 RARG-204ENST00000543726 1779 ntTSL 2 BASIC14.14□□□□□ -0.15
RPS28P62857 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPS28P62857 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC14.14□□□□□ -0.15
RPS28P62857 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPS28P62857 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPS28P62857 AC007952.6-201ENST00000573168 2673 ntBASIC14.14□□□□□ -0.15
RPS28P62857 AC003957.1-201ENST00000625108 2673 ntBASIC14.14□□□□□ -0.15
RPS28P62857 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPS28P62857 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPS28P62857 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPS28P62857 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPS28P62857 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPS28P62857 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
RPS28P62857 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPS28P62857 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC14.13□□□□□ -0.15
RPS28P62857 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPS28P62857 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms