Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.04■□□□□ 0.96
CX3CR1P49238 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.04■□□□□ 0.96
CX3CR1P49238 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CX3CR1P49238 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.04■□□□□ 0.96
CX3CR1P49238 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CX3CR1P49238 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CX3CR1P49238 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CX3CR1P49238 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.03■□□□□ 0.96
CX3CR1P49238 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.03■□□□□ 0.96
CX3CR1P49238 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CX3CR1P49238 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.02■□□□□ 0.96
CX3CR1P49238 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
CX3CR1P49238 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CX3CR1P49238 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CX3CR1P49238 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CX3CR1P49238 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CX3CR1P49238 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
CX3CR1P49238 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CX3CR1P49238 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CX3CR1P49238 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CX3CR1P49238 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.01■□□□□ 0.95
CX3CR1P49238 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.01■□□□□ 0.95
CX3CR1P49238 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CX3CR1P49238 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CX3CR1P49238 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21■□□□□ 0.95
CX3CR1P49238 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21■□□□□ 0.95
CX3CR1P49238 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21■□□□□ 0.95
CX3CR1P49238 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CX3CR1P49238 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21■□□□□ 0.95
CX3CR1P49238 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
CX3CR1P49238 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CX3CR1P49238 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CR1P49238 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.99■□□□□ 0.95
CX3CR1P49238 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CR1P49238 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CR1P49238 AC025884.2-201ENST00000553429 711 ntBASIC20.99■□□□□ 0.95
CX3CR1P49238 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CR1P49238 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CR1P49238 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CR1P49238 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.99■□□□□ 0.95
CX3CR1P49238 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CX3CR1P49238 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.98■□□□□ 0.95
CX3CR1P49238 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.98■□□□□ 0.95
CX3CR1P49238 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CX3CR1P49238 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CX3CR1P49238 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.98■□□□□ 0.95
CX3CR1P49238 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.98■□□□□ 0.95
CX3CR1P49238 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CX3CR1P49238 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CR1P49238 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CR1P49238 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CR1P49238 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CX3CR1P49238 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.97■□□□□ 0.95
CX3CR1P49238 MIR3960-201ENST00000583311 91 ntBASIC20.97■□□□□ 0.95
CX3CR1P49238 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.97■□□□□ 0.95
CX3CR1P49238 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CR1P49238 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.97■□□□□ 0.95
CX3CR1P49238 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CR1P49238 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CR1P49238 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CX3CR1P49238 AC092296.2-201ENST00000589470 999 ntBASIC20.96■□□□□ 0.95
CX3CR1P49238 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CX3CR1P49238 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CX3CR1P49238 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CX3CR1P49238 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CX3CR1P49238 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CX3CR1P49238 SMPD5-203ENST00000639008 1464 ntBASIC20.95■□□□□ 0.94
CX3CR1P49238 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CX3CR1P49238 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CX3CR1P49238 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CX3CR1P49238 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CX3CR1P49238 AC022413.1-201ENST00000624602 984 ntBASIC20.95■□□□□ 0.94
CX3CR1P49238 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.95■□□□□ 0.94
CX3CR1P49238 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CX3CR1P49238 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CX3CR1P49238 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.94■□□□□ 0.94
CX3CR1P49238 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CX3CR1P49238 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.94■□□□□ 0.94
CX3CR1P49238 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CX3CR1P49238 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.93■□□□□ 0.94
CX3CR1P49238 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CX3CR1P49238 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CX3CR1P49238 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CX3CR1P49238 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.93■□□□□ 0.94
CX3CR1P49238 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.93■□□□□ 0.94
CX3CR1P49238 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CX3CR1P49238 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CX3CR1P49238 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.93■□□□□ 0.94
CX3CR1P49238 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
CX3CR1P49238 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CX3CR1P49238 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CX3CR1P49238 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CX3CR1P49238 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CX3CR1P49238 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CX3CR1P49238 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CX3CR1P49238 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CX3CR1P49238 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CX3CR1P49238 ECEL1P2-201ENST00000461596 1295 ntBASIC20.91■□□□□ 0.94
CX3CR1P49238 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.91■□□□□ 0.94
CX3CR1P49238 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms