Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX2P48431 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX2P48431 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX2P48431 AL359504.2-201ENST00000605506 1601 ntBASIC20.99■□□□□ 0.95
SOX2P48431 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX2P48431 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SOX2P48431 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX2P48431 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX2P48431 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX2P48431 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX2P48431 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SOX2P48431 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.98■□□□□ 0.95
SOX2P48431 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.98■□□□□ 0.95
SOX2P48431 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX2P48431 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX2P48431 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.97■□□□□ 0.95
SOX2P48431 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX2P48431 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX2P48431 AC148477.6-201ENST00000623746 465 ntBASIC20.97■□□□□ 0.95
SOX2P48431 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SOX2P48431 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX2P48431 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SOX2P48431 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX2P48431 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.96■□□□□ 0.95
SOX2P48431 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.96■□□□□ 0.95
SOX2P48431 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SOX2P48431 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SOX2P48431 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.95■□□□□ 0.94
SOX2P48431 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.95■□□□□ 0.94
SOX2P48431 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.95■□□□□ 0.94
SOX2P48431 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX2P48431 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.94■□□□□ 0.94
SOX2P48431 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SOX2P48431 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SOX2P48431 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SOX2P48431 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.94■□□□□ 0.94
SOX2P48431 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX2P48431 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SOX2P48431 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX2P48431 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX2P48431 HLA-V-202ENST00000446817 847 ntBASIC20.93■□□□□ 0.94
SOX2P48431 DUX4L11-201ENST00000611504 1267 ntBASIC20.93■□□□□ 0.94
SOX2P48431 DUX4L12-201ENST00000614593 1267 ntBASIC20.93■□□□□ 0.94
SOX2P48431 DUX4L14-201ENST00000621227 1267 ntBASIC20.93■□□□□ 0.94
SOX2P48431 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX2P48431 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX2P48431 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SOX2P48431 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SOX2P48431 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
SOX2P48431 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SOX2P48431 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.92■□□□□ 0.94
SOX2P48431 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SOX2P48431 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SOX2P48431 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.92■□□□□ 0.94
SOX2P48431 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SOX2P48431 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
SOX2P48431 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SOX2P48431 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.91■□□□□ 0.94
SOX2P48431 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.9■□□□□ 0.94
SOX2P48431 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX2P48431 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX2P48431 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX2P48431 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX2P48431 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX2P48431 RPS2P35-201ENST00000443417 897 ntBASIC20.9■□□□□ 0.94
SOX2P48431 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX2P48431 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.89■□□□□ 0.94
SOX2P48431 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SOX2P48431 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SOX2P48431 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.89■□□□□ 0.93
SOX2P48431 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.89■□□□□ 0.93
SOX2P48431 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SOX2P48431 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX2P48431 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.89■□□□□ 0.93
SOX2P48431 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.88■□□□□ 0.93
SOX2P48431 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SOX2P48431 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX2P48431 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms