Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HNF4AP41235 AC096887.2-201ENST00000623443 1957 ntBASIC23.24■■□□□ 1.31
HNF4AP41235 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.24■■□□□ 1.31
HNF4AP41235 RARRES2P2-201ENST00000394842 485 ntBASIC23.24■■□□□ 1.31
HNF4AP41235 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
HNF4AP41235 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
HNF4AP41235 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HNF4AP41235 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.23■■□□□ 1.31
HNF4AP41235 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HNF4AP41235 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.23■■□□□ 1.31
HNF4AP41235 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HNF4AP41235 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HNF4AP41235 AC020928.2-201ENST00000588717 2197 ntBASIC23.23■■□□□ 1.31
HNF4AP41235 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.22■■□□□ 1.31
HNF4AP41235 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HNF4AP41235 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HNF4AP41235 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.22■■□□□ 1.31
HNF4AP41235 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HNF4AP41235 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.22■■□□□ 1.31
HNF4AP41235 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
HNF4AP41235 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HNF4AP41235 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.21■■□□□ 1.31
HNF4AP41235 AC007029.1-201ENST00000604183 313 ntBASIC23.21■■□□□ 1.31
HNF4AP41235 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
HNF4AP41235 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.2■■□□□ 1.3
HNF4AP41235 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.2■■□□□ 1.3
HNF4AP41235 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HNF4AP41235 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
HNF4AP41235 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.2■■□□□ 1.3
HNF4AP41235 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
HNF4AP41235 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HNF4AP41235 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.19■■□□□ 1.3
HNF4AP41235 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HNF4AP41235 RP9P-202ENST00000450133 1212 ntBASIC23.19■■□□□ 1.3
HNF4AP41235 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
HNF4AP41235 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HNF4AP41235 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HNF4AP41235 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
HNF4AP41235 AC093536.1-201ENST00000569153 554 ntBASIC23.18■■□□□ 1.3
HNF4AP41235 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HNF4AP41235 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HNF4AP41235 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HNF4AP41235 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
HNF4AP41235 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
HNF4AP41235 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HNF4AP41235 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HNF4AP41235 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.17■■□□□ 1.3
HNF4AP41235 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
HNF4AP41235 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
HNF4AP41235 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HNF4AP41235 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
HNF4AP41235 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
HNF4AP41235 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.3
HNF4AP41235 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
HNF4AP41235 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HNF4AP41235 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.16■■□□□ 1.3
HNF4AP41235 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HNF4AP41235 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
HNF4AP41235 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HNF4AP41235 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HNF4AP41235 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.16■■□□□ 1.3
HNF4AP41235 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
HNF4AP41235 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HNF4AP41235 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HNF4AP41235 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.3
HNF4AP41235 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
HNF4AP41235 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
HNF4AP41235 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
HNF4AP41235 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.14■■□□□ 1.29
HNF4AP41235 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HNF4AP41235 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
HNF4AP41235 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.13■■□□□ 1.29
HNF4AP41235 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HNF4AP41235 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.13■■□□□ 1.29
HNF4AP41235 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HNF4AP41235 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
HNF4AP41235 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
HNF4AP41235 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HNF4AP41235 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
HNF4AP41235 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.12■■□□□ 1.29
HNF4AP41235 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HNF4AP41235 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
HNF4AP41235 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HNF4AP41235 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
HNF4AP41235 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HNF4AP41235 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
HNF4AP41235 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.11■■□□□ 1.29
HNF4AP41235 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HNF4AP41235 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HNF4AP41235 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HNF4AP41235 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.1■■□□□ 1.29
HNF4AP41235 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HNF4AP41235 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HNF4AP41235 AC026202.3-201ENST00000600805 1127 ntBASIC23.1■■□□□ 1.29
HNF4AP41235 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HNF4AP41235 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HNF4AP41235 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
HNF4AP41235 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
HNF4AP41235 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HNF4AP41235 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms