Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.76■□□□□ 0.91
MT-ND4P03905 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.76■□□□□ 0.91
MT-ND4P03905 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
MT-ND4P03905 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.76■□□□□ 0.91
MT-ND4P03905 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.76■□□□□ 0.91
MT-ND4P03905 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MT-ND4P03905 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MT-ND4P03905 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.75■□□□□ 0.91
MT-ND4P03905 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MT-ND4P03905 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.75■□□□□ 0.91
MT-ND4P03905 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MT-ND4P03905 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.75■□□□□ 0.91
MT-ND4P03905 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MT-ND4P03905 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MT-ND4P03905 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MT-ND4P03905 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.74■□□□□ 0.91
MT-ND4P03905 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MT-ND4P03905 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MT-ND4P03905 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.74■□□□□ 0.91
MT-ND4P03905 LINC01971-201ENST00000617888 1048 ntBASIC20.73■□□□□ 0.91
MT-ND4P03905 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.73■□□□□ 0.91
MT-ND4P03905 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MT-ND4P03905 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MT-ND4P03905 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MT-ND4P03905 AC068473.5-201ENST00000616428 2072 ntBASIC20.73■□□□□ 0.91
MT-ND4P03905 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MT-ND4P03905 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
MT-ND4P03905 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MT-ND4P03905 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MT-ND4P03905 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MT-ND4P03905 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MT-ND4P03905 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.71■□□□□ 0.91
MT-ND4P03905 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MT-ND4P03905 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MT-ND4P03905 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.71■□□□□ 0.91
MT-ND4P03905 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
MT-ND4P03905 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
MT-ND4P03905 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.71■□□□□ 0.91
MT-ND4P03905 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MT-ND4P03905 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MT-ND4P03905 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
MT-ND4P03905 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
MT-ND4P03905 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MT-ND4P03905 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.69■□□□□ 0.9
MT-ND4P03905 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.69■□□□□ 0.9
MT-ND4P03905 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MT-ND4P03905 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MT-ND4P03905 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.69■□□□□ 0.9
MT-ND4P03905 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MT-ND4P03905 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.68■□□□□ 0.9
MT-ND4P03905 WHAMMP3-201ENST00000611636 1609 ntBASIC20.68■□□□□ 0.9
MT-ND4P03905 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.68■□□□□ 0.9
MT-ND4P03905 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MT-ND4P03905 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MT-ND4P03905 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L13-201ENST00000554103 1267 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L15-201ENST00000611059 1267 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L23-201ENST00000615195 1269 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L24-201ENST00000617576 1269 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L22-201ENST00000618238 1269 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L20-201ENST00000619712 1269 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L21-201ENST00000622058 1269 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L10-201ENST00000622460 1267 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 DUX4L25-201ENST00000624915 1269 ntBASIC20.67■□□□□ 0.9
MT-ND4P03905 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MT-ND4P03905 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MT-ND4P03905 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MT-ND4P03905 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MT-ND4P03905 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MT-ND4P03905 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MT-ND4P03905 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MT-ND4P03905 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
MT-ND4P03905 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MT-ND4P03905 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
MT-ND4P03905 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MT-ND4P03905 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
MT-ND4P03905 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
MT-ND4P03905 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
MT-ND4P03905 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MT-ND4P03905 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
MT-ND4P03905 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MT-ND4P03905 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MT-ND4P03905 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
MT-ND4P03905 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MT-ND4P03905 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MT-ND4P03905 LINC01124-201ENST00000409786 2117 ntBASIC20.63■□□□□ 0.89
MT-ND4P03905 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.63■□□□□ 0.89
MT-ND4P03905 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MT-ND4P03905 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MT-ND4P03905 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MT-ND4P03905 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.63■□□□□ 0.89
MT-ND4P03905 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.63■□□□□ 0.89
MT-ND4P03905 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
MT-ND4P03905 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.63■□□□□ 0.89
MT-ND4P03905 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.63■□□□□ 0.89
MT-ND4P03905 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.63■□□□□ 0.89
MT-ND4P03905 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
MT-ND4P03905 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms