Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.75■■□□□ 1.07
TRAV27A0A087WT01 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV27A0A087WT01 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.74■■□□□ 1.07
TRAV27A0A087WT01 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.74■■□□□ 1.07
TRAV27A0A087WT01 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.74■■□□□ 1.07
TRAV27A0A087WT01 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.74■■□□□ 1.07
TRAV27A0A087WT01 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV27A0A087WT01 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV27A0A087WT01 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV27A0A087WT01 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.73■■□□□ 1.07
TRAV27A0A087WT01 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV27A0A087WT01 AC142381.3-201ENST00000568208 1670 ntBASIC21.73■■□□□ 1.07
TRAV27A0A087WT01 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV27A0A087WT01 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV27A0A087WT01 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV27A0A087WT01 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV27A0A087WT01 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV27A0A087WT01 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV27A0A087WT01 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV27A0A087WT01 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.72■■□□□ 1.07
TRAV27A0A087WT01 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.71■■□□□ 1.07
TRAV27A0A087WT01 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV27A0A087WT01 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV27A0A087WT01 AL157400.5-201ENST00000507624 621 ntBASIC21.71■■□□□ 1.07
TRAV27A0A087WT01 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.71■■□□□ 1.07
TRAV27A0A087WT01 AC093323.1-202ENST00000635031 2045 ntBASIC21.71■■□□□ 1.07
TRAV27A0A087WT01 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV27A0A087WT01 AC138932.3-201ENST00000567634 1902 ntBASIC21.7■■□□□ 1.07
TRAV27A0A087WT01 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV27A0A087WT01 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV27A0A087WT01 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV27A0A087WT01 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV27A0A087WT01 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TRAV27A0A087WT01 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV27A0A087WT01 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV27A0A087WT01 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV27A0A087WT01 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV27A0A087WT01 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV27A0A087WT01 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV27A0A087WT01 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.67■■□□□ 1.06
TRAV27A0A087WT01 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV27A0A087WT01 AC060814.1-201ENST00000554326 538 ntBASIC21.67■■□□□ 1.06
TRAV27A0A087WT01 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.67■■□□□ 1.06
TRAV27A0A087WT01 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV27A0A087WT01 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV27A0A087WT01 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV27A0A087WT01 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TRAV27A0A087WT01 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV27A0A087WT01 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV27A0A087WT01 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
TRAV27A0A087WT01 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRAV27A0A087WT01 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAV27A0A087WT01 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 MIR639-201ENST00000384974 98 ntBASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 AC025884.2-201ENST00000553429 711 ntBASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
TRAV27A0A087WT01 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV27A0A087WT01 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
TRAV27A0A087WT01 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 173 ms