Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL662799.1-202ENST00000614205 422 ntBASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 AC073592.8-201ENST00000624126 511 ntBASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDHGA1Q9Y5H4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 RNU1-129P-201ENST00000384064 167 ntBASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 SERBP1P5-201ENST00000510079 1181 ntBASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 U1.21-201ENST00000580816 167 ntBASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 AL031055.1-201ENST00000606362 631 ntBASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDHGA1Q9Y5H4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 OR6D1P-202ENST00000641007 5290 ntBASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 GNAS-203ENST00000306120 1878 ntBASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 AL596325.1-201ENST00000563991 1082 ntBASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 AC091167.2-201ENST00000579581 588 ntBASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 MIR4453-201ENST00000584019 89 ntBASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDHGA1Q9Y5H4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 BICD1-207ENST00000551848 1962 ntBASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDHGA1Q9Y5H4 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms