Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL161645.1-201ENST00000622716 1255 ntBASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 AC046185.3-201ENST00000623228 1824 ntBASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 AC135776.1-201ENST00000319817 2481 ntBASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 AC020916.1-201ENST00000587762 1774 ntBASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 RN7SL832P-201ENST00000607781 1756 ntBASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMD1Q9UGP4 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 SPDYE14P-201ENST00000442619 822 ntBASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 AC107918.2-201ENST00000530817 355 ntBASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 AC008764.6-201ENST00000595909 2069 ntBASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMD1Q9UGP4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMD1Q9UGP4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms