Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 AC005052.1-201ENST00000625181 2492 ntBASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 AL049757.1-201ENST00000616842 1596 ntBASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 AC074051.2-201ENST00000565115 352 ntBASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 TP73-AS1-210ENST00000637775 1455 ntBASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 NSUN5P1-202ENST00000421140 1535 ntBASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 NSUN5P2-203ENST00000457352 1529 ntBASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC39Q9UFE4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 MIR3180-1-201ENST00000580374 94 ntBASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 MIR3180-3-201ENST00000584616 94 ntBASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 NPAP1P7-201ENST00000613027 823 ntBASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
CCDC39Q9UFE4 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 KRT8P10-201ENST00000450021 1447 ntBASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 TSPY26P-202ENST00000565928 3884 ntBASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 IGHV3-47-201ENST00000425060 335 ntBASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 ATP5G2P1-201ENST00000433580 426 ntBASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 AC104819.1-201ENST00000504587 486 ntBASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 AP000867.3-201ENST00000524675 377 ntBASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms