Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 AC099522.2-201ENST00000607001 744 ntBASIC15.06■□□□□ 0
CLCF1Q9UBD9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
CLCF1Q9UBD9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
CLCF1Q9UBD9 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 SLC22A20-204ENST00000530038 1673 ntBASIC15.06■□□□□ 0
CLCF1Q9UBD9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLCF1Q9UBD9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLCF1Q9UBD9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
CLCF1Q9UBD9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
CLCF1Q9UBD9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
CLCF1Q9UBD9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.05■□□□□ 0
CLCF1Q9UBD9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
CLCF1Q9UBD9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.05■□□□□ 0
CLCF1Q9UBD9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLCF1Q9UBD9 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.05■□□□□ 0
CLCF1Q9UBD9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
CLCF1Q9UBD9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
CLCF1Q9UBD9 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 AL513210.1-201ENST00000629608 234 ntBASIC15.05■□□□□ -0
CLCF1Q9UBD9 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLCF1Q9UBD9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
CLCF1Q9UBD9 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.04■□□□□ -0
CLCF1Q9UBD9 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 KRT8P49-201ENST00000604166 1432 ntBASIC15.04■□□□□ -0
CLCF1Q9UBD9 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 AL021920.2-201ENST00000624828 1351 ntBASIC15.04■□□□□ -0
CLCF1Q9UBD9 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 AL355306.1-201ENST00000415580 579 ntBASIC15.04■□□□□ -0
CLCF1Q9UBD9 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
CLCF1Q9UBD9 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.04■□□□□ -0
CLCF1Q9UBD9 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 310 ms