Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNTN3Q9P232 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CNTN3Q9P232 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNTN3Q9P232 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.19■□□□□ 0.5
CNTN3Q9P232 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 AP000344.2-201ENST00000512987 629 ntBASIC18.18■□□□□ 0.5
CNTN3Q9P232 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 CYP2A7P1-201ENST00000595391 815 ntBASIC18.18■□□□□ 0.5
CNTN3Q9P232 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 AL513210.1-201ENST00000629608 234 ntBASIC18.18■□□□□ 0.5
CNTN3Q9P232 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNTN3Q9P232 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CNTN3Q9P232 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 CNN2P11-201ENST00000429351 262 ntBASIC18.17■□□□□ 0.5
CNTN3Q9P232 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 SNHG9-202ENST00000564014 471 ntBASIC18.17■□□□□ 0.5
CNTN3Q9P232 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 AL031055.1-201ENST00000606362 631 ntBASIC18.17■□□□□ 0.5
CNTN3Q9P232 AC105339.1-204ENST00000636249 355 ntBASIC18.17■□□□□ 0.5
CNTN3Q9P232 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNTN3Q9P232 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.17■□□□□ 0.5
CNTN3Q9P232 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 AC092474.2-201ENST00000424288 719 ntBASIC18.16■□□□□ 0.5
CNTN3Q9P232 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNTN3Q9P232 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CNTN3Q9P232 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
CNTN3Q9P232 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CNTN3Q9P232 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms