Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BRF2Q9HAW0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
BRF2Q9HAW0 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
BRF2Q9HAW0 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 IFNL4P1-201ENST00000607083 540 ntBASIC16.23■□□□□ 0.19
BRF2Q9HAW0 AC107918.4-202ENST00000641623 219 ntBASIC16.23■□□□□ 0.19
BRF2Q9HAW0 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BRF2Q9HAW0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 AC006538.1-201ENST00000567905 1585 ntBASIC16.22■□□□□ 0.19
BRF2Q9HAW0 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 PTCHD3P3-201ENST00000403073 906 ntBASIC16.22■□□□□ 0.19
BRF2Q9HAW0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 AC087163.2-201ENST00000457299 853 ntBASIC16.22■□□□□ 0.19
BRF2Q9HAW0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BRF2Q9HAW0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 KRT18P56-201ENST00000507275 550 ntBASIC16.21■□□□□ 0.19
BRF2Q9HAW0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 AC012313.10-201ENST00000623509 926 ntBASIC16.21■□□□□ 0.19
BRF2Q9HAW0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BRF2Q9HAW0 AC092171.3-201ENST00000610122 2651 ntBASIC16.21■□□□□ 0.18
BRF2Q9HAW0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.21■□□□□ 0.18
BRF2Q9HAW0 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.21■□□□□ 0.18
BRF2Q9HAW0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.2■□□□□ 0.18
BRF2Q9HAW0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms