Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 PCED1CP-201ENST00000419887 785 ntBASIC14.87□□□□□ -0.03
NKX3-1Q99801 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 CBFB-203ENST00000561924 584 ntTSL 5 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 AL592071.1-201ENST00000611956 408 ntBASIC14.87□□□□□ -0.03
NKX3-1Q99801 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.87□□□□□ -0.03
NKX3-1Q99801 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 AL135999.2-201ENST00000622438 1686 ntBASIC14.87□□□□□ -0.03
NKX3-1Q99801 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 IER3-202ENST00000376377 1350 ntBASIC14.86□□□□□ -0.03
NKX3-1Q99801 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 ALOX12P2-203ENST00000570921 1945 ntBASIC14.86□□□□□ -0.03
NKX3-1Q99801 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 TSPY22P-201ENST00000427496 604 ntBASIC14.86□□□□□ -0.03
NKX3-1Q99801 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.86□□□□□ -0.03
NKX3-1Q99801 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 AL121956.5-201ENST00000625261 221 ntBASIC14.86□□□□□ -0.03
NKX3-1Q99801 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 AL391005.1-201ENST00000623953 2435 ntBASIC14.86□□□□□ -0.03
NKX3-1Q99801 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
NKX3-1Q99801 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
NKX3-1Q99801 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 AC005052.1-201ENST00000625181 2492 ntBASIC14.85□□□□□ -0.03
NKX3-1Q99801 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 AL645929.1-201ENST00000420084 975 ntBASIC14.85□□□□□ -0.03
NKX3-1Q99801 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms