Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.4■□□□□ 0.7
USP28Q96RU2 AL139288.1-201ENST00000623748 933 ntBASIC19.4■□□□□ 0.7
USP28Q96RU2 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USP28Q96RU2 AL356309.3-201ENST00000624132 1934 ntBASIC19.4■□□□□ 0.7
USP28Q96RU2 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
USP28Q96RU2 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.4■□□□□ 0.7
USP28Q96RU2 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP28Q96RU2 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP28Q96RU2 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.39■□□□□ 0.69
USP28Q96RU2 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 SART3-203ENST00000546611 1184 ntBASIC19.39■□□□□ 0.69
USP28Q96RU2 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.39■□□□□ 0.69
USP28Q96RU2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.39■□□□□ 0.69
USP28Q96RU2 AL139424.1-201ENST00000607572 797 ntBASIC19.39■□□□□ 0.69
USP28Q96RU2 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.39■□□□□ 0.69
USP28Q96RU2 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.39■□□□□ 0.69
USP28Q96RU2 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
USP28Q96RU2 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.39■□□□□ 0.69
USP28Q96RU2 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP28Q96RU2 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.38■□□□□ 0.69
USP28Q96RU2 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
USP28Q96RU2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.38■□□□□ 0.69
USP28Q96RU2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.38■□□□□ 0.69
USP28Q96RU2 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.38■□□□□ 0.69
USP28Q96RU2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
USP28Q96RU2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.38■□□□□ 0.69
USP28Q96RU2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.38■□□□□ 0.69
USP28Q96RU2 KRT18P31-201ENST00000506277 1292 ntBASIC19.38■□□□□ 0.69
USP28Q96RU2 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.38■□□□□ 0.69
USP28Q96RU2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
USP28Q96RU2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
USP28Q96RU2 AC006538.1-201ENST00000567905 1585 ntBASIC19.38■□□□□ 0.69
USP28Q96RU2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.38■□□□□ 0.69
USP28Q96RU2 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.38■□□□□ 0.69
USP28Q96RU2 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP28Q96RU2 AL355877.3-201ENST00000622820 899 ntBASIC19.38■□□□□ 0.69
USP28Q96RU2 AC006277.1-201ENST00000624348 1610 ntBASIC19.38■□□□□ 0.69
USP28Q96RU2 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
USP28Q96RU2 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
USP28Q96RU2 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.37■□□□□ 0.69
USP28Q96RU2 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.37■□□□□ 0.69
USP28Q96RU2 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.37■□□□□ 0.69
USP28Q96RU2 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.37■□□□□ 0.69
USP28Q96RU2 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
USP28Q96RU2 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP28Q96RU2 FGFR3P6-201ENST00000457012 610 ntBASIC19.37■□□□□ 0.69
USP28Q96RU2 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms