Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC42Q96M95 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC42Q96M95 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC42Q96M95 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC42Q96M95 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 TP73-AS1-210ENST00000637775 1455 ntBASIC18.35■□□□□ 0.53
CCDC42Q96M95 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC42Q96M95 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC42Q96M95 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 DUX4L26-201ENST00000489078 1255 ntBASIC18.35■□□□□ 0.53
CCDC42Q96M95 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC42Q96M95 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CCDC42Q96M95 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.34■□□□□ 0.53
CCDC42Q96M95 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 AL162727.3-201ENST00000635661 2787 ntBASIC18.34■□□□□ 0.53
CCDC42Q96M95 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 BX276092.5-203ENST00000456199 560 ntBASIC18.34■□□□□ 0.53
CCDC42Q96M95 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC42Q96M95 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC42Q96M95 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC42Q96M95 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 ALOX12P2-203ENST00000570921 1945 ntBASIC18.33■□□□□ 0.53
CCDC42Q96M95 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC42Q96M95 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC42Q96M95 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC42Q96M95 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC42Q96M95 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CCDC42Q96M95 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.33■□□□□ 0.52
CCDC42Q96M95 CHCHD2P8-201ENST00000429873 447 ntBASIC18.33■□□□□ 0.52
CCDC42Q96M95 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC42Q96M95 AP005901.3-202ENST00000581653 237 ntBASIC18.33■□□□□ 0.52
CCDC42Q96M95 NTF6B-201ENST00000591913 560 ntBASIC18.33■□□□□ 0.52
CCDC42Q96M95 AL121672.3-201ENST00000608644 468 ntBASIC18.33■□□□□ 0.52
CCDC42Q96M95 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC42Q96M95 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC42Q96M95 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC42Q96M95 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
CCDC42Q96M95 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC42Q96M95 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC42Q96M95 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms