Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 AC100757.3-201ENST00000622361 1406 ntBASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 SPDYE22P-201ENST00000582158 798 ntBASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 AL590560.3-201ENST00000623350 461 ntBASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 AC073592.8-201ENST00000624126 511 ntBASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
SNRNP40Q96DI7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 OR8S1-201ENST00000310194 1080 ntBASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 NME2P1-201ENST00000426182 414 ntBASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 AC007274.1-201ENST00000439805 662 ntBASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 MEIS3P1-201ENST00000495167 958 ntBASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 AL596325.1-201ENST00000563991 1082 ntBASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 AC016027.1-202ENST00000607927 1699 ntBASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 HTR7P1-202ENST00000624664 4411 ntBASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SNRNP40Q96DI7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 SLC22A20-204ENST00000530038 1673 ntBASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.17■□□□□ 0.02
SNRNP40Q96DI7 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms