Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 SIGLEC16-201ENST00000599858 1437 ntBASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 AL049597.2-201ENST00000565575 961 ntBASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 AP005901.3-202ENST00000581653 237 ntBASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 AP000867.4-201ENST00000641616 219 ntBASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 AL021920.2-201ENST00000624828 1351 ntBASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC54Q8NEL0 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 NSUN5P1-202ENST00000421140 1535 ntBASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 NSUN5P2-203ENST00000457352 1529 ntBASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 AC096582.2-201ENST00000510860 516 ntBASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 TPSP2-201ENST00000561760 610 ntBASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC54Q8NEL0 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms