Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC22.23■■□□□ 1.15
USP54Q70EL1 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 AP002490.2-201ENST00000524791 560 ntBASIC22.23■■□□□ 1.15
USP54Q70EL1 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC22.23■■□□□ 1.15
USP54Q70EL1 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC22.23■■□□□ 1.15
USP54Q70EL1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
USP54Q70EL1 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC22.23■■□□□ 1.15
USP54Q70EL1 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC22.23■■□□□ 1.15
USP54Q70EL1 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
USP54Q70EL1 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC22.23■■□□□ 1.15
USP54Q70EL1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
USP54Q70EL1 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC22.23■■□□□ 1.15
USP54Q70EL1 AC007274.1-201ENST00000439805 662 ntBASIC22.23■■□□□ 1.15
USP54Q70EL1 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC22.23■■□□□ 1.15
USP54Q70EL1 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 KRT8P12-202ENST00000472924 1397 ntBASIC22.23■■□□□ 1.15
USP54Q70EL1 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC22.22■■□□□ 1.15
USP54Q70EL1 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 AC063926.2-201ENST00000623766 1308 ntBASIC22.22■■□□□ 1.15
USP54Q70EL1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC22.22■■□□□ 1.15
USP54Q70EL1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
USP54Q70EL1 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
USP54Q70EL1 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC22.22■■□□□ 1.15
USP54Q70EL1 RASL12-203ENST00000434605 982 ntTSL 2 BASIC22.22■■□□□ 1.15
USP54Q70EL1 AC098859.1-201ENST00000502915 1238 ntBASIC22.22■■□□□ 1.15
USP54Q70EL1 CDK4-206ENST00000549606 558 ntTSL 2 BASIC22.22■■□□□ 1.15
USP54Q70EL1 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC22.22■■□□□ 1.15
USP54Q70EL1 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC22.22■■□□□ 1.15
USP54Q70EL1 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
USP54Q70EL1 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
USP54Q70EL1 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC22.22■■□□□ 1.15
USP54Q70EL1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
USP54Q70EL1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
USP54Q70EL1 PCDHB17P-201ENST00000539533 2393 ntBASIC22.21■■□□□ 1.15
USP54Q70EL1 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
USP54Q70EL1 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC22.21■■□□□ 1.15
USP54Q70EL1 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
USP54Q70EL1 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC22.21■■□□□ 1.15
USP54Q70EL1 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC22.21■■□□□ 1.15
USP54Q70EL1 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC22.21■■□□□ 1.15
USP54Q70EL1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 CU639417.3-201ENST00000624240 1404 ntBASIC22.21■■□□□ 1.15
USP54Q70EL1 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 AL031731.1-201ENST00000642131 2094 ntBASIC22.21■■□□□ 1.15
USP54Q70EL1 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC22.21■■□□□ 1.15
USP54Q70EL1 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
USP54Q70EL1 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
USP54Q70EL1 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.15
USP54Q70EL1 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.15
USP54Q70EL1 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC22.2■■□□□ 1.15
USP54Q70EL1 AL512638.1-201ENST00000457493 794 ntBASIC22.2■■□□□ 1.15
USP54Q70EL1 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
USP54Q70EL1 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC22.2■■□□□ 1.15
USP54Q70EL1 CR383656.12-201ENST00000549567 513 ntBASIC22.2■■□□□ 1.15
USP54Q70EL1 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.15
USP54Q70EL1 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC22.2■■□□□ 1.15
USP54Q70EL1 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC22.2■■□□□ 1.15
USP54Q70EL1 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC22.2■■□□□ 1.14
USP54Q70EL1 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC22.2■■□□□ 1.14
USP54Q70EL1 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC22.2■■□□□ 1.14
USP54Q70EL1 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC22.2■■□□□ 1.14
USP54Q70EL1 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
USP54Q70EL1 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC22.2■■□□□ 1.14
USP54Q70EL1 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC22.2■■□□□ 1.14
USP54Q70EL1 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC22.2■■□□□ 1.14
USP54Q70EL1 NAA38-207ENST00000576861 556 ntTSL 3 BASIC22.2■■□□□ 1.14
USP54Q70EL1 SSH2-210ENST00000582084 560 ntTSL 3 BASIC22.2■■□□□ 1.14
USP54Q70EL1 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC22.2■■□□□ 1.14
USP54Q70EL1 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms