Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC11.23□□□□□ -0.61
VPS13DQ5THJ4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 RAB43P1-201ENST00000561790 589 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 GGT4P-201ENST00000623672 1708 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 CD81-207ENST00000481687 890 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC023310.3-201ENST00000557027 670 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC100756.1-201ENST00000562736 682 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC138749.3-201ENST00000567691 622 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC116165.1-201ENST00000611806 668 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AC003101.2-201ENST00000612557 442 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 AL138688.1-201ENST00000624851 1594 ntBASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
VPS13DQ5THJ4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 SPDYE17-201ENST00000412399 783 ntBASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 MIR6775-201ENST00000617557 69 ntBASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
VPS13DQ5THJ4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC11.21□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms