Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AP006294.1-201ENST00000415407 339 ntBASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AC022494.1-201ENST00000466044 728 ntBASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AC106886.1-201ENST00000568660 600 ntBASIC21.1■□□□□ 0.97
RC3H1Q5TC82 FHL2-212ENST00000607522 759 ntTSL 2 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 AL354751.1-201ENST00000412768 1863 ntBASIC21.09■□□□□ 0.97
RC3H1Q5TC82 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 AL512384.1-201ENST00000406683 331 ntBASIC21.09■□□□□ 0.97
RC3H1Q5TC82 RASL12-203ENST00000434605 982 ntTSL 2 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 CHCHD2P3-201ENST00000603038 451 ntBASIC21.09■□□□□ 0.97
RC3H1Q5TC82 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 RNF165-205ENST00000588679 2904 ntBASIC21.09■□□□□ 0.97
RC3H1Q5TC82 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
RC3H1Q5TC82 AC004408.2-201ENST00000623613 2777 ntBASIC21.08■□□□□ 0.97
RC3H1Q5TC82 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 RPS19-201ENST00000221975 500 ntTSL 3 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 RN7SL752P-201ENST00000463779 287 ntBASIC21.08■□□□□ 0.97
RC3H1Q5TC82 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 AC093004.1-201ENST00000508850 424 ntBASIC21.08■□□□□ 0.97
RC3H1Q5TC82 RNA5SP410-201ENST00000516285 106 ntBASIC21.08■□□□□ 0.97
RC3H1Q5TC82 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
RC3H1Q5TC82 AC013467.2-201ENST00000605472 835 ntBASIC21.08■□□□□ 0.97
RC3H1Q5TC82 AC004790.1-201ENST00000612686 536 ntBASIC21.08■□□□□ 0.97
RC3H1Q5TC82 MIR6799-201ENST00000620297 69 ntBASIC21.08■□□□□ 0.97
RC3H1Q5TC82 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.08■□□□□ 0.96
RC3H1Q5TC82 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 RBM39-205ENST00000397370 612 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 AL512361.1-201ENST00000554200 418 ntBASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms