Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.15□□□□□ -0.15
PDLIM3Q53GG5 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14.15□□□□□ -0.15
PDLIM3Q53GG5 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 KRT18P67-201ENST00000432816 1264 ntBASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 AC004967.1-201ENST00000453589 447 ntBASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 AF186996.4-201ENST00000467186 377 ntBASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 AF238378.1-201ENST00000526806 358 ntBASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM3Q53GG5 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 AC243591.1-201ENST00000452967 1364 ntBASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 RPSAP43-201ENST00000402237 625 ntBASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 FAM8A3P-201ENST00000427218 844 ntBASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 AC112698.1-201ENST00000510299 916 ntBASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 SART3-203ENST00000546611 1184 ntBASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 MIR3687-2-201ENST00000577708 61 ntBASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms