Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL28A1Q2UY09 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL28A1Q2UY09 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL28A1Q2UY09 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL28A1Q2UY09 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
COL28A1Q2UY09 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL28A1Q2UY09 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL28A1Q2UY09 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 AL512638.1-201ENST00000457493 794 ntBASIC16.33■□□□□ 0.2
COL28A1Q2UY09 RN7SL692P-201ENST00000464677 288 ntBASIC16.33■□□□□ 0.2
COL28A1Q2UY09 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 AC011270.2-201ENST00000624293 2550 ntBASIC16.33■□□□□ 0.2
COL28A1Q2UY09 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.33■□□□□ 0.2
COL28A1Q2UY09 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.33■□□□□ 0.2
COL28A1Q2UY09 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 COX5BP8-201ENST00000416911 349 ntBASIC16.32■□□□□ 0.2
COL28A1Q2UY09 AC107890.1-201ENST00000422478 521 ntBASIC16.32■□□□□ 0.2
COL28A1Q2UY09 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 OR7E47P-204ENST00000575924 449 ntBASIC16.32■□□□□ 0.2
COL28A1Q2UY09 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 FO538757.1-201ENST00000623083 1397 ntBASIC16.32■□□□□ 0.2
COL28A1Q2UY09 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 AL805961.1-202ENST00000641562 540 ntBASIC16.32■□□□□ 0.2
COL28A1Q2UY09 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL28A1Q2UY09 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 AC008764.6-201ENST00000595909 2069 ntBASIC16.31■□□□□ 0.2
COL28A1Q2UY09 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.31■□□□□ 0.2
COL28A1Q2UY09 SLC25A6P5-201ENST00000435663 894 ntBASIC16.31■□□□□ 0.2
COL28A1Q2UY09 AC125807.1-201ENST00000483097 614 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms