Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.67■□□□□ 0.58
PEX3P56589 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.67■□□□□ 0.58
PEX3P56589 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.67■□□□□ 0.58
PEX3P56589 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PEX3P56589 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PEX3P56589 BCAR1-209ENST00000546196 1340 ntBASIC18.67■□□□□ 0.58
PEX3P56589 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PEX3P56589 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PEX3P56589 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.67■□□□□ 0.58
PEX3P56589 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PEX3P56589 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PEX3P56589 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.67■□□□□ 0.58
PEX3P56589 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PEX3P56589 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PEX3P56589 AL121761.2-201ENST00000598007 1648 ntBASIC18.67■□□□□ 0.58
PEX3P56589 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.67■□□□□ 0.58
PEX3P56589 AC025580.3-201ENST00000617932 1424 ntBASIC18.66■□□□□ 0.58
PEX3P56589 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PEX3P56589 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
PEX3P56589 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 AC022211.2-201ENST00000585075 2527 ntBASIC18.66■□□□□ 0.58
PEX3P56589 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
PEX3P56589 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PEX3P56589 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
PEX3P56589 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.66■□□□□ 0.58
PEX3P56589 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PEX3P56589 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
PEX3P56589 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
PEX3P56589 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PEX3P56589 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.66■□□□□ 0.58
PEX3P56589 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PEX3P56589 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.66■□□□□ 0.58
PEX3P56589 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PEX3P56589 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.66■□□□□ 0.58
PEX3P56589 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
PEX3P56589 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.66■□□□□ 0.58
PEX3P56589 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PEX3P56589 AC005915.1-201ENST00000624912 2018 ntBASIC18.66■□□□□ 0.58
PEX3P56589 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PEX3P56589 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.65■□□□□ 0.58
PEX3P56589 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.65■□□□□ 0.58
PEX3P56589 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.65■□□□□ 0.58
PEX3P56589 AC040169.1-201ENST00000565382 521 ntBASIC18.65■□□□□ 0.58
PEX3P56589 AC005412.3-201ENST00000580309 715 ntBASIC18.65■□□□□ 0.58
PEX3P56589 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.65■□□□□ 0.58
PEX3P56589 AC023141.13-201ENST00000604991 943 ntBASIC18.65■□□□□ 0.58
PEX3P56589 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.65■□□□□ 0.58
PEX3P56589 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PEX3P56589 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PEX3P56589 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
PEX3P56589 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PEX3P56589 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
PEX3P56589 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PEX3P56589 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PEX3P56589 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PEX3P56589 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.58
PEX3P56589 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PEX3P56589 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 SLC22A20-204ENST00000530038 1673 ntBASIC18.64■□□□□ 0.57
PEX3P56589 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.64■□□□□ 0.57
PEX3P56589 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PEX3P56589 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PEX3P56589 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.64■□□□□ 0.57
PEX3P56589 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms