Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.3■□□□□ 0.36
CDH4P55283 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.3■□□□□ 0.36
CDH4P55283 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH4P55283 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH4P55283 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
CDH4P55283 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.3■□□□□ 0.36
CDH4P55283 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.3■□□□□ 0.36
CDH4P55283 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDH4P55283 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH4P55283 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 PCDHB17P-201ENST00000539533 2393 ntBASIC17.29■□□□□ 0.36
CDH4P55283 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CDH4P55283 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CDH4P55283 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.29■□□□□ 0.36
CDH4P55283 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH4P55283 UPF3AP3-201ENST00000420996 769 ntBASIC17.29■□□□□ 0.36
CDH4P55283 GPX1P2-201ENST00000429271 606 ntBASIC17.29■□□□□ 0.36
CDH4P55283 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
CDH4P55283 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.29■□□□□ 0.36
CDH4P55283 MIR3687-2-201ENST00000577708 61 ntBASIC17.29■□□□□ 0.36
CDH4P55283 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 AC013467.2-201ENST00000605472 835 ntBASIC17.29■□□□□ 0.36
CDH4P55283 MIR3687-1-201ENST00000614492 61 ntBASIC17.29■□□□□ 0.36
CDH4P55283 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.29■□□□□ 0.36
CDH4P55283 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CDH4P55283 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDH4P55283 AC106820.2-201ENST00000563775 3264 ntBASIC17.29■□□□□ 0.36
CDH4P55283 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDH4P55283 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.29■□□□□ 0.36
CDH4P55283 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH4P55283 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH4P55283 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 AC026471.1-201ENST00000564629 3026 ntBASIC17.28■□□□□ 0.36
CDH4P55283 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 RPSAP43-201ENST00000402237 625 ntBASIC17.28■□□□□ 0.36
CDH4P55283 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.28■□□□□ 0.36
CDH4P55283 AC140658.5-201ENST00000438532 169 ntBASIC17.28■□□□□ 0.36
CDH4P55283 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH4P55283 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CDH4P55283 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH4P55283 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.28■□□□□ 0.36
CDH4P55283 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH4P55283 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH4P55283 AC010327.4-202ENST00000591484 748 ntBASIC17.28■□□□□ 0.36
CDH4P55283 C20orf181-201ENST00000623918 480 ntBASIC17.28■□□□□ 0.36
CDH4P55283 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 AC006277.1-201ENST00000624348 1610 ntBASIC17.28■□□□□ 0.36
CDH4P55283 LINC00895-201ENST00000629028 1637 ntBASIC17.28■□□□□ 0.36
CDH4P55283 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH4P55283 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH4P55283 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CDH4P55283 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDH4P55283 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH4P55283 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH4P55283 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH4P55283 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH4P55283 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CDH4P55283 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH4P55283 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH4P55283 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CDH4P55283 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH4P55283 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH4P55283 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH4P55283 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms