Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ELK1P1-201ENST00000485699 580 ntBASIC23.21■■□□□ 1.31
MSH6P52701 AC044860.1-202ENST00000559481 777 ntBASIC23.21■■□□□ 1.31
MSH6P52701 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH6P52701 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC23.21■■□□□ 1.31
MSH6P52701 GPR182-203ENST00000622922 591 ntBASIC23.21■■□□□ 1.31
MSH6P52701 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC23.21■■□□□ 1.31
MSH6P52701 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC23.21■■□□□ 1.31
MSH6P52701 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC23.21■■□□□ 1.31
MSH6P52701 AC090164.3-201ENST00000610780 2143 ntBASIC23.21■■□□□ 1.31
MSH6P52701 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
MSH6P52701 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
MSH6P52701 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
MSH6P52701 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
MSH6P52701 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.31
MSH6P52701 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
MSH6P52701 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 ANKRD19P-201ENST00000338192 862 ntBASIC23.2■■□□□ 1.3
MSH6P52701 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
MSH6P52701 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC23.2■■□□□ 1.3
MSH6P52701 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 BOLA2P3-201ENST00000404566 256 ntBASIC23.2■■□□□ 1.3
MSH6P52701 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC23.2■■□□□ 1.3
MSH6P52701 RAB35-202ENST00000534951 939 ntTSL 2 BASIC23.2■■□□□ 1.3
MSH6P52701 USB1-203ENST00000539737 1212 ntTSL 2 BASIC23.2■■□□□ 1.3
MSH6P52701 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 MNT-208ENST00000575394 606 ntTSL 4 BASIC23.2■■□□□ 1.3
MSH6P52701 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC23.2■■□□□ 1.3
MSH6P52701 CTBP2P3-201ENST00000585629 1255 ntBASIC23.2■■□□□ 1.3
MSH6P52701 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC23.2■■□□□ 1.3
MSH6P52701 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH6P52701 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH6P52701 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
MSH6P52701 SLC9A3P2-201ENST00000447821 2021 ntBASIC23.2■■□□□ 1.3
MSH6P52701 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH6P52701 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 MFF-223ENST00000524634 647 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH6P52701 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
MSH6P52701 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC23.19■■□□□ 1.3
MSH6P52701 AC008735.3-201ENST00000596646 500 ntBASIC23.19■■□□□ 1.3
MSH6P52701 TMEM261P1-201ENST00000604899 340 ntBASIC23.19■■□□□ 1.3
MSH6P52701 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
MSH6P52701 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 AC120498.9-201ENST00000339021 3867 ntBASIC23.19■■□□□ 1.3
MSH6P52701 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH6P52701 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH6P52701 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH6P52701 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH6P52701 RPS19-201ENST00000221975 500 ntTSL 3 BASIC23.18■■□□□ 1.3
MSH6P52701 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 HLA-DPB2-205ENST00000435074 1188 ntBASIC23.18■■□□□ 1.3
MSH6P52701 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC23.18■■□□□ 1.3
MSH6P52701 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH6P52701 AC104989.1-201ENST00000519711 778 ntBASIC23.18■■□□□ 1.3
MSH6P52701 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 MAX-210ENST00000555419 765 ntTSL 5 BASIC23.18■■□□□ 1.3
MSH6P52701 MPDU1-223ENST00000582151 728 ntBASIC23.18■■□□□ 1.3
MSH6P52701 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
MSH6P52701 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC23.18■■□□□ 1.3
MSH6P52701 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
MSH6P52701 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
MSH6P52701 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
MSH6P52701 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH6P52701 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH6P52701 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH6P52701 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH6P52701 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
MSH6P52701 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH6P52701 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC23.17■■□□□ 1.3
MSH6P52701 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms