Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA1P49639 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA1P49639 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA1P49639 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA1P49639 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA1P49639 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXA1P49639 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
HOXA1P49639 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA1P49639 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HOXA1P49639 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
HOXA1P49639 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXA1P49639 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXA1P49639 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.15□□□□□ -0.14
HOXA1P49639 KRT89P-201ENST00000620027 1478 ntBASIC14.15□□□□□ -0.14
HOXA1P49639 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HOXA1P49639 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 CRAT-202ENST00000393384 973 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 TSPY12P-201ENST00000421279 868 ntBASIC14.15□□□□□ -0.14
HOXA1P49639 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC14.15□□□□□ -0.14
HOXA1P49639 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 RPS20-210ENST00000523936 899 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXA1P49639 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXA1P49639 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXA1P49639 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXA1P49639 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXA1P49639 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXA1P49639 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
HOXA1P49639 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.15□□□□□ -0.15
HOXA1P49639 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
HOXA1P49639 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
HOXA1P49639 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXA1P49639 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXA1P49639 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXA1P49639 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXA1P49639 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.14□□□□□ -0.15
HOXA1P49639 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.14□□□□□ -0.15
HOXA1P49639 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXA1P49639 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 AC016396.2-201ENST00000562575 1417 ntBASIC14.14□□□□□ -0.15
HOXA1P49639 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXA1P49639 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXA1P49639 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXA1P49639 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXA1P49639 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXA1P49639 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms