Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TNFSF9P41273 AL645728.1-201ENST00000366221 2101 ntBASIC18.3■□□□□ 0.52
TNFSF9P41273 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.3■□□□□ 0.52
TNFSF9P41273 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.3■□□□□ 0.52
TNFSF9P41273 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.3■□□□□ 0.52
TNFSF9P41273 DNAJB3-201ENST00000446806 729 ntBASIC18.3■□□□□ 0.52
TNFSF9P41273 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.3■□□□□ 0.52
TNFSF9P41273 AL031432.2-201ENST00000566714 459 ntBASIC18.3■□□□□ 0.52
TNFSF9P41273 AL928711.1-201ENST00000570165 459 ntBASIC18.3■□□□□ 0.52
TNFSF9P41273 AP002472.1-201ENST00000577490 586 ntBASIC18.3■□□□□ 0.52
TNFSF9P41273 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TNFSF9P41273 AL645728.2-201ENST00000641974 660 ntBASIC18.3■□□□□ 0.52
TNFSF9P41273 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
TNFSF9P41273 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
TNFSF9P41273 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TNFSF9P41273 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFSF9P41273 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.3■□□□□ 0.52
TNFSF9P41273 AC105020.1-201ENST00000435356 2205 ntBASIC18.3■□□□□ 0.52
TNFSF9P41273 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFSF9P41273 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.3■□□□□ 0.52
TNFSF9P41273 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TNFSF9P41273 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TNFSF9P41273 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFSF9P41273 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.3■□□□□ 0.52
TNFSF9P41273 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFSF9P41273 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.29■□□□□ 0.52
TNFSF9P41273 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.29■□□□□ 0.52
TNFSF9P41273 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFSF9P41273 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TNFSF9P41273 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.29■□□□□ 0.52
TNFSF9P41273 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.29■□□□□ 0.52
TNFSF9P41273 AC091812.2-201ENST00000619081 385 ntBASIC18.29■□□□□ 0.52
TNFSF9P41273 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.29■□□□□ 0.52
TNFSF9P41273 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.29■□□□□ 0.52
TNFSF9P41273 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFSF9P41273 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TNFSF9P41273 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TNFSF9P41273 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.28■□□□□ 0.52
TNFSF9P41273 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TNFSF9P41273 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TNFSF9P41273 FAM58CP-201ENST00000435741 640 ntBASIC18.28■□□□□ 0.52
TNFSF9P41273 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.28■□□□□ 0.52
TNFSF9P41273 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TNFSF9P41273 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFSF9P41273 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.28■□□□□ 0.52
TNFSF9P41273 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.28■□□□□ 0.52
TNFSF9P41273 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.28■□□□□ 0.52
TNFSF9P41273 AC139530.3-201ENST00000620344 690 ntBASIC18.28■□□□□ 0.52
TNFSF9P41273 C20orf181-201ENST00000623918 480 ntBASIC18.28■□□□□ 0.52
TNFSF9P41273 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.28■□□□□ 0.52
TNFSF9P41273 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TNFSF9P41273 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.28■□□□□ 0.52
TNFSF9P41273 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.28■□□□□ 0.52
TNFSF9P41273 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 RNF216P1-203ENST00000404404 2427 ntBASIC18.28■□□□□ 0.52
TNFSF9P41273 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TNFSF9P41273 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
TNFSF9P41273 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.27■□□□□ 0.52
TNFSF9P41273 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TNFSF9P41273 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TNFSF9P41273 AL671710.1-201ENST00000610245 2349 ntBASIC18.27■□□□□ 0.52
TNFSF9P41273 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TNFSF9P41273 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TNFSF9P41273 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.27■□□□□ 0.52
TNFSF9P41273 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TNFSF9P41273 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TNFSF9P41273 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TNFSF9P41273 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TNFSF9P41273 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.27■□□□□ 0.52
TNFSF9P41273 MIR1233-2-201ENST00000408138 82 ntBASIC18.27■□□□□ 0.52
TNFSF9P41273 MIR1233-1-201ENST00000408722 82 ntBASIC18.27■□□□□ 0.52
TNFSF9P41273 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TNFSF9P41273 HCG4-201ENST00000418983 998 ntBASIC18.27■□□□□ 0.52
TNFSF9P41273 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.27■□□□□ 0.52
TNFSF9P41273 HTR5BP-201ENST00000430851 1154 ntBASIC18.27■□□□□ 0.52
TNFSF9P41273 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.27■□□□□ 0.52
TNFSF9P41273 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms