Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FAM21FP-201ENST00000426241 1131 ntBASIC19.72■□□□□ 0.75
SCN4AP35499 GOLGA2P4-201ENST00000441462 777 ntBASIC19.72■□□□□ 0.75
SCN4AP35499 RHOA-206ENST00000454011 889 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 AC024267.1-201ENST00000582320 895 ntBASIC19.72■□□□□ 0.75
SCN4AP35499 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.72■□□□□ 0.75
SCN4AP35499 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.72■□□□□ 0.75
SCN4AP35499 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.72■□□□□ 0.75
SCN4AP35499 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.72■□□□□ 0.75
SCN4AP35499 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SCN4AP35499 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.72■□□□□ 0.75
SCN4AP35499 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.72■□□□□ 0.75
SCN4AP35499 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.72■□□□□ 0.75
SCN4AP35499 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.72■□□□□ 0.75
SCN4AP35499 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.72■□□□□ 0.75
SCN4AP35499 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.72■□□□□ 0.75
SCN4AP35499 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN4AP35499 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN4AP35499 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN4AP35499 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.71■□□□□ 0.75
SCN4AP35499 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN4AP35499 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN4AP35499 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN4AP35499 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SCN4AP35499 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.71■□□□□ 0.75
SCN4AP35499 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN4AP35499 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN4AP35499 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.71■□□□□ 0.75
SCN4AP35499 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.71■□□□□ 0.75
SCN4AP35499 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SCN4AP35499 SDHAP3-202ENST00000515467 728 ntBASIC19.71■□□□□ 0.75
SCN4AP35499 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.71■□□□□ 0.75
SCN4AP35499 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.71■□□□□ 0.75
SCN4AP35499 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC19.71■□□□□ 0.75
SCN4AP35499 APRT-204ENST00000563655 709 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN4AP35499 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.71■□□□□ 0.75
SCN4AP35499 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN4AP35499 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN4AP35499 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN4AP35499 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SCN4AP35499 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.74
SCN4AP35499 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.7■□□□□ 0.74
SCN4AP35499 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SCN4AP35499 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN4AP35499 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN4AP35499 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.7■□□□□ 0.74
SCN4AP35499 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SCN4AP35499 PAM16-204ENST00000571941 674 ntTSL 3 BASIC19.7■□□□□ 0.74
SCN4AP35499 AC061975.2-201ENST00000581722 295 ntBASIC19.7■□□□□ 0.74
SCN4AP35499 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SCN4AP35499 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN4AP35499 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
SCN4AP35499 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN4AP35499 AC138028.4-201ENST00000564984 1845 ntBASIC19.7■□□□□ 0.74
SCN4AP35499 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN4AP35499 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.7■□□□□ 0.74
SCN4AP35499 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN4AP35499 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.69■□□□□ 0.74
SCN4AP35499 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.69■□□□□ 0.74
SCN4AP35499 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SCN4AP35499 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.69■□□□□ 0.74
SCN4AP35499 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms