Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 AC003669.1-201ENST00000334569 611 ntBASIC12.98□□□□□ -0.33
HLA-DMBP28068 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 DRAXINP1-201ENST00000437611 948 ntBASIC12.98□□□□□ -0.33
HLA-DMBP28068 MINOS1P3-201ENST00000457048 203 ntBASIC12.98□□□□□ -0.33
HLA-DMBP28068 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 TPSP2-201ENST00000561760 610 ntBASIC12.98□□□□□ -0.33
HLA-DMBP28068 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 AL121894.2-201ENST00000602977 491 ntBASIC12.98□□□□□ -0.33
HLA-DMBP28068 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 LINC02199-201ENST00000506655 2702 ntBASIC12.98□□□□□ -0.33
HLA-DMBP28068 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DMBP28068 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DMBP28068 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 RCN1P2-201ENST00000398357 915 ntBASIC12.97□□□□□ -0.33
HLA-DMBP28068 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 SDHD-206ENST00000528182 754 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 BNIP3P18-201ENST00000593976 575 ntBASIC12.97□□□□□ -0.33
HLA-DMBP28068 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 AC148477.5-201ENST00000625164 1645 ntBASIC12.97□□□□□ -0.33
HLA-DMBP28068 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 NSUN5P1-202ENST00000421140 1535 ntBASIC12.97□□□□□ -0.33
HLA-DMBP28068 NSUN5P2-203ENST00000457352 1529 ntBASIC12.97□□□□□ -0.33
HLA-DMBP28068 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms