Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC012569.1-201ENST00000591191 1524 ntBASIC17.86■□□□□ 0.45
BDNFP23560 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 SLC22A20-204ENST00000530038 1673 ntBASIC17.86■□□□□ 0.45
BDNFP23560 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.86■□□□□ 0.45
BDNFP23560 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
BDNFP23560 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.86■□□□□ 0.45
BDNFP23560 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.85■□□□□ 0.45
BDNFP23560 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.85■□□□□ 0.45
BDNFP23560 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.85■□□□□ 0.45
BDNFP23560 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
BDNFP23560 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.85■□□□□ 0.45
BDNFP23560 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.85■□□□□ 0.45
BDNFP23560 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.85■□□□□ 0.45
BDNFP23560 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.85■□□□□ 0.45
BDNFP23560 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
BDNFP23560 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.85■□□□□ 0.45
BDNFP23560 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.85■□□□□ 0.45
BDNFP23560 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.85■□□□□ 0.45
BDNFP23560 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.85■□□□□ 0.45
BDNFP23560 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.85■□□□□ 0.45
BDNFP23560 AC092902.6-201ENST00000641783 218 ntBASIC17.85■□□□□ 0.45
BDNFP23560 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
BDNFP23560 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.84■□□□□ 0.45
BDNFP23560 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.84■□□□□ 0.45
BDNFP23560 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.84■□□□□ 0.45
BDNFP23560 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.84■□□□□ 0.45
BDNFP23560 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
BDNFP23560 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.84■□□□□ 0.45
BDNFP23560 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
BDNFP23560 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.84■□□□□ 0.45
BDNFP23560 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.84■□□□□ 0.45
BDNFP23560 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
BDNFP23560 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.84■□□□□ 0.45
BDNFP23560 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.84■□□□□ 0.45
BDNFP23560 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
BDNFP23560 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.84■□□□□ 0.45
BDNFP23560 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.84■□□□□ 0.45
BDNFP23560 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.84■□□□□ 0.45
BDNFP23560 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.84■□□□□ 0.45
BDNFP23560 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.84■□□□□ 0.45
BDNFP23560 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
BDNFP23560 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BDNFP23560 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.83■□□□□ 0.45
BDNFP23560 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.83■□□□□ 0.45
BDNFP23560 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
BDNFP23560 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
BDNFP23560 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.83■□□□□ 0.44
BDNFP23560 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.83■□□□□ 0.44
BDNFP23560 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.83■□□□□ 0.44
BDNFP23560 AC140658.5-201ENST00000438532 169 ntBASIC17.83■□□□□ 0.44
BDNFP23560 DNAJB3-202ENST00000449667 1266 ntBASIC17.83■□□□□ 0.44
BDNFP23560 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.83■□□□□ 0.44
BDNFP23560 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.83■□□□□ 0.44
BDNFP23560 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 MPDU1-223ENST00000582151 728 ntBASIC17.83■□□□□ 0.44
BDNFP23560 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.83■□□□□ 0.44
BDNFP23560 AP001160.2-201ENST00000596071 487 ntBASIC17.83■□□□□ 0.44
BDNFP23560 AL596442.2-201ENST00000610240 980 ntBASIC17.83■□□□□ 0.44
BDNFP23560 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.83■□□□□ 0.44
BDNFP23560 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
BDNFP23560 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms