Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.58■□□□□ 0.73
COL2A1P02458 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL2A1P02458 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL2A1P02458 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL2A1P02458 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL2A1P02458 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.73
COL2A1P02458 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.58■□□□□ 0.72
COL2A1P02458 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 SPTSSB-204ENST00000617024 1292 ntBASIC19.58■□□□□ 0.72
COL2A1P02458 AL590560.3-201ENST00000623350 461 ntBASIC19.58■□□□□ 0.72
COL2A1P02458 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL2A1P02458 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
COL2A1P02458 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL2A1P02458 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
COL2A1P02458 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
COL2A1P02458 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL2A1P02458 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL2A1P02458 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL2A1P02458 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL2A1P02458 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
COL2A1P02458 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.57■□□□□ 0.72
COL2A1P02458 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL2A1P02458 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL2A1P02458 AC009477.1-201ENST00000452936 217 ntBASIC19.57■□□□□ 0.72
COL2A1P02458 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL2A1P02458 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC19.57■□□□□ 0.72
COL2A1P02458 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC19.57■□□□□ 0.72
COL2A1P02458 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL2A1P02458 LINC02560-201ENST00000596379 459 ntBASIC19.57■□□□□ 0.72
COL2A1P02458 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC19.57■□□□□ 0.72
COL2A1P02458 AL035252.4-201ENST00000624174 288 ntBASIC19.57■□□□□ 0.72
COL2A1P02458 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
COL2A1P02458 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.57■□□□□ 0.72
COL2A1P02458 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL2A1P02458 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL2A1P02458 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL2A1P02458 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 AC098859.1-201ENST00000502915 1238 ntBASIC19.56■□□□□ 0.72
COL2A1P02458 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.56■□□□□ 0.72
COL2A1P02458 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.56■□□□□ 0.72
COL2A1P02458 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
COL2A1P02458 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL2A1P02458 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL2A1P02458 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.56■□□□□ 0.72
COL2A1P02458 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.55■□□□□ 0.72
COL2A1P02458 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.55■□□□□ 0.72
COL2A1P02458 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.55■□□□□ 0.72
COL2A1P02458 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 AL080243.2-201ENST00000418783 582 ntBASIC19.55■□□□□ 0.72
COL2A1P02458 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.55■□□□□ 0.72
COL2A1P02458 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.55■□□□□ 0.72
COL2A1P02458 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 AC022144.1-201ENST00000602255 1580 ntBASIC19.55■□□□□ 0.72
COL2A1P02458 PP12613-201ENST00000424958 2230 ntBASIC19.55■□□□□ 0.72
COL2A1P02458 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
COL2A1P02458 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL2A1P02458 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.55■□□□□ 0.72
COL2A1P02458 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.55■□□□□ 0.72
COL2A1P02458 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.55■□□□□ 0.72
COL2A1P02458 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL2A1P02458 PCDHB17P-201ENST00000539533 2393 ntBASIC19.55■□□□□ 0.72
COL2A1P02458 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL2A1P02458 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL2A1P02458 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL2A1P02458 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.54■□□□□ 0.72
COL2A1P02458 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.54■□□□□ 0.72
COL2A1P02458 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.54■□□□□ 0.72
COL2A1P02458 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL2A1P02458 AC093724.1-201ENST00000448659 1027 ntBASIC19.54■□□□□ 0.72
COL2A1P02458 CRB3P1-201ENST00000449338 276 ntBASIC19.54■□□□□ 0.72
COL2A1P02458 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.54■□□□□ 0.72
COL2A1P02458 AC027369.6-201ENST00000525520 931 ntBASIC19.54■□□□□ 0.72
COL2A1P02458 LITAF-210ENST00000571976 548 ntTSL 2 BASIC19.54■□□□□ 0.72
COL2A1P02458 LITAF-214ENST00000574703 486 ntTSL 2 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms