Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS4BO75351 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 UBALD1-205ENST00000590891 2641 ntBASIC16.69■□□□□ 0.26
VPS4BO75351 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.69■□□□□ 0.26
VPS4BO75351 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS4BO75351 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS4BO75351 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.68■□□□□ 0.26
VPS4BO75351 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS4BO75351 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS4BO75351 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.68■□□□□ 0.26
VPS4BO75351 AL591684.3-201ENST00000605187 298 ntBASIC16.68■□□□□ 0.26
VPS4BO75351 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
VPS4BO75351 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS4BO75351 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS4BO75351 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS4BO75351 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VPS4BO75351 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VPS4BO75351 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS4BO75351 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS4BO75351 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
VPS4BO75351 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 RPL13AP23-201ENST00000480739 586 ntBASIC16.67■□□□□ 0.26
VPS4BO75351 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS4BO75351 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS4BO75351 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.67■□□□□ 0.26
VPS4BO75351 AL138831.2-201ENST00000606564 490 ntBASIC16.67■□□□□ 0.26
VPS4BO75351 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS4BO75351 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
VPS4BO75351 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS4BO75351 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
VPS4BO75351 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 DOC2GP-204ENST00000639052 2548 ntBASIC16.67■□□□□ 0.26
VPS4BO75351 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VPS4BO75351 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 GPR89P-201ENST00000407924 1495 ntBASIC16.67■□□□□ 0.26
VPS4BO75351 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS4BO75351 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS4BO75351 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.66■□□□□ 0.26
VPS4BO75351 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 RNF216P1-203ENST00000404404 2427 ntBASIC16.66■□□□□ 0.26
VPS4BO75351 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
VPS4BO75351 FER1L4-210ENST00000615531 5998 ntBASIC16.66■□□□□ 0.26
VPS4BO75351 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VPS4BO75351 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
VPS4BO75351 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms