Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AC006538.1-201ENST00000567905 1585 ntBASIC16.51■□□□□ 0.23
NDE1Q9NXR1 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AC097374.2-201ENST00000618617 1306 ntBASIC16.51■□□□□ 0.23
NDE1Q9NXR1 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.51■□□□□ 0.23
NDE1Q9NXR1 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AC128688.1-201ENST00000487626 519 ntBASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AC034232.1-201ENST00000506026 1064 ntBASIC16.51■□□□□ 0.23
NDE1Q9NXR1 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
NDE1Q9NXR1 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 TUBB8P12-201ENST00000308911 1335 ntBASIC16.5■□□□□ 0.23
NDE1Q9NXR1 TUBB7P-202ENST00000428444 1305 ntBASIC16.5■□□□□ 0.23
NDE1Q9NXR1 TUBB8P7-204ENST00000567960 1332 ntBASIC16.5■□□□□ 0.23
NDE1Q9NXR1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 FITM1-202ENST00000559294 800 ntBASIC16.5■□□□□ 0.23
NDE1Q9NXR1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 AC004263.2-201ENST00000617183 678 ntBASIC16.5■□□□□ 0.23
NDE1Q9NXR1 AL049637.2-201ENST00000641778 930 ntBASIC16.5■□□□□ 0.23
NDE1Q9NXR1 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
NDE1Q9NXR1 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 TSPY14P-201ENST00000303979 915 ntBASIC16.49■□□□□ 0.23
NDE1Q9NXR1 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 RBM17P1-201ENST00000453646 1190 ntBASIC16.49■□□□□ 0.23
NDE1Q9NXR1 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.49■□□□□ 0.23
NDE1Q9NXR1 AC233702.5-201ENST00000584107 538 ntBASIC16.49■□□□□ 0.23
NDE1Q9NXR1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms