Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRIM39Q9HCM9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 MIR940-201ENST00000401276 94 ntBASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 HCG4B-203ENST00000450128 991 ntBASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 RNA5SP416-201ENST00000516838 111 ntBASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 AC064836.3-201ENST00000607928 673 ntBASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM39Q9HCM9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 SLC25A6P2-201ENST00000497974 877 ntBASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 POLD2P1-201ENST00000511220 997 ntBASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 AC129492.6-201ENST00000611383 1305 ntBASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 FRMD8P1-201ENST00000440433 1524 ntBASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM39Q9HCM9 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 AC108860.2-201ENST00000562760 2183 ntBASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms