Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 AC023141.13-201ENST00000604991 943 ntBASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 AC068137.2-201ENST00000605408 478 ntBASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 AC007064.4-201ENST00000637740 555 ntBASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 LINC02084-201ENST00000606069 1096 ntBASIC20.57■□□□□ 0.88
RPAP1Q9BWH6 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 AC025580.3-201ENST00000617932 1424 ntBASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 AL118508.1-201ENST00000613502 2345 ntBASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 AC074386.1-202ENST00000463561 864 ntBASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 CXCL1P1-201ENST00000502804 216 ntBASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPAP1Q9BWH6 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 AL645939.2-201ENST00000427340 991 ntBASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 AC124947.2-201ENST00000547118 1133 ntBASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 AL513210.1-201ENST00000629608 234 ntBASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RPAP1Q9BWH6 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 TSEN15P1-201ENST00000423257 515 ntBASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 ADH5P3-201ENST00000433842 1137 ntBASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.54■□□□□ 0.88
RPAP1Q9BWH6 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms