Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 HLA-J-202ENST00000469281 1241 ntBASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 ALOX12P2-203ENST00000570921 1945 ntBASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 AC006538.1-201ENST00000567905 1585 ntBASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 AC079328.2-201ENST00000561241 3354 ntBASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 GUSBP12-201ENST00000513727 720 ntBASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC28BQ9BUN5 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 AC003669.1-201ENST00000334569 611 ntBASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC28BQ9BUN5 ATP5G1P1-201ENST00000448724 379 ntBASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms