Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.43■□□□□ 0.7
USP28Q96RU2 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
USP28Q96RU2 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.43■□□□□ 0.7
USP28Q96RU2 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP28Q96RU2 AL021920.2-201ENST00000624828 1351 ntBASIC19.43■□□□□ 0.7
USP28Q96RU2 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
USP28Q96RU2 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.43■□□□□ 0.7
USP28Q96RU2 KRT8P49-201ENST00000604166 1432 ntBASIC19.42■□□□□ 0.7
USP28Q96RU2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.42■□□□□ 0.7
USP28Q96RU2 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.42■□□□□ 0.7
USP28Q96RU2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.42■□□□□ 0.7
USP28Q96RU2 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP28Q96RU2 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.42■□□□□ 0.7
USP28Q96RU2 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP28Q96RU2 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 AC026691.1-201ENST00000602502 2017 ntBASIC19.42■□□□□ 0.7
USP28Q96RU2 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 NCF1C-201ENST00000438382 1427 ntBASIC19.42■□□□□ 0.7
USP28Q96RU2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
USP28Q96RU2 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP28Q96RU2 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
USP28Q96RU2 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.41■□□□□ 0.7
USP28Q96RU2 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.41■□□□□ 0.7
USP28Q96RU2 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 AL391005.1-201ENST00000623953 2435 ntBASIC19.41■□□□□ 0.7
USP28Q96RU2 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
USP28Q96RU2 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
USP28Q96RU2 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.41■□□□□ 0.7
USP28Q96RU2 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 MIR1224-201ENST00000408193 85 ntBASIC19.41■□□□□ 0.7
USP28Q96RU2 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
USP28Q96RU2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.41■□□□□ 0.7
USP28Q96RU2 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.41■□□□□ 0.7
USP28Q96RU2 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP28Q96RU2 AC005052.1-201ENST00000625181 2492 ntBASIC19.41■□□□□ 0.7
USP28Q96RU2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.41■□□□□ 0.7
USP28Q96RU2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
USP28Q96RU2 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 AC008741.2-201ENST00000612792 3115 ntBASIC19.4■□□□□ 0.7
USP28Q96RU2 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
USP28Q96RU2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.4■□□□□ 0.7
USP28Q96RU2 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.4■□□□□ 0.7
USP28Q96RU2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.4■□□□□ 0.7
USP28Q96RU2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 CYP2T1P-202ENST00000641596 2535 ntBASIC19.4■□□□□ 0.7
USP28Q96RU2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 RBM17P3-201ENST00000417687 1192 ntBASIC19.4■□□□□ 0.7
USP28Q96RU2 UPK3BP1-201ENST00000428678 509 ntBASIC19.4■□□□□ 0.7
USP28Q96RU2 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.4■□□□□ 0.7
USP28Q96RU2 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP28Q96RU2 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.4■□□□□ 0.7
USP28Q96RU2 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.4■□□□□ 0.7
USP28Q96RU2 MTDHP3-201ENST00000594186 672 ntBASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms