Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 AC040169.1-201ENST00000565382 521 ntBASIC17.5■□□□□ 0.39
RPRD1AQ96P16 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 REXO1L3P-201ENST00000622202 1288 ntBASIC17.5■□□□□ 0.39
RPRD1AQ96P16 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 AL021920.2-201ENST00000624828 1351 ntBASIC17.5■□□□□ 0.39
RPRD1AQ96P16 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPRD1AQ96P16 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 AP001094.4-201ENST00000579008 2176 ntBASIC17.49■□□□□ 0.39
RPRD1AQ96P16 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 AC023274.1-201ENST00000418278 595 ntBASIC17.49■□□□□ 0.39
RPRD1AQ96P16 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 ACTL9-202ENST00000612068 1252 ntBASIC17.49■□□□□ 0.39
RPRD1AQ96P16 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
RPRD1AQ96P16 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 BCAR1-209ENST00000546196 1340 ntBASIC17.48■□□□□ 0.39
RPRD1AQ96P16 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 AL513480.1-201ENST00000451731 511 ntBASIC17.48■□□□□ 0.39
RPRD1AQ96P16 DUX4L17-201ENST00000557360 1267 ntBASIC17.48■□□□□ 0.39
RPRD1AQ96P16 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 AC004877.2-201ENST00000623941 599 ntBASIC17.48■□□□□ 0.39
RPRD1AQ96P16 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 AC060834.1-201ENST00000443027 2032 ntBASIC17.48■□□□□ 0.39
RPRD1AQ96P16 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPRD1AQ96P16 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RPRD1AQ96P16 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPRD1AQ96P16 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
RPRD1AQ96P16 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.47■□□□□ 0.39
RPRD1AQ96P16 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms