Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 AL645728.1-201ENST00000366221 2101 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 AC092910.1-201ENST00000482027 1129 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 SLC25A6P2-201ENST00000497974 877 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 RNA5SP419-201ENST00000515908 135 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 IGHV3-65-201ENST00000523210 341 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 AP002490.2-201ENST00000524791 560 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 AC005593.1-201ENST00000624894 515 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PGM5P2-202ENST00000637225 1043 ntBASIC13.15□□□□□ -0.3
CCDC140Q96MF4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.15□□□□□ -0.3
CCDC140Q96MF4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.15□□□□□ -0.31
CCDC140Q96MF4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
CCDC140Q96MF4 AC099398.1-201ENST00000567919 2776 ntBASIC13.15□□□□□ -0.31
CCDC140Q96MF4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 GGTLC5P-201ENST00000617623 998 ntBASIC13.14□□□□□ -0.31
CCDC140Q96MF4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.14□□□□□ -0.31
CCDC140Q96MF4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 TOP3BP1-201ENST00000420768 1380 ntBASIC13.14□□□□□ -0.31
CCDC140Q96MF4 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CCDC140Q96MF4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms