Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.31■□□□□ 0.52
LRCH3Q96II8 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRCH3Q96II8 AC020763.4-201ENST00000623414 4170 ntBASIC18.31■□□□□ 0.52
LRCH3Q96II8 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 ANKRD19P-201ENST00000338192 862 ntBASIC18.3■□□□□ 0.52
LRCH3Q96II8 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 HLA-V-204ENST00000476601 1289 ntBASIC18.3■□□□□ 0.52
LRCH3Q96II8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRCH3Q96II8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.3■□□□□ 0.52
LRCH3Q96II8 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 AL354751.1-201ENST00000412768 1863 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 ACTG1P4-201ENST00000425123 1122 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 IGHV3-52-201ENST00000519770 353 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 AC107918.2-201ENST00000530817 355 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 AC008735.3-201ENST00000596646 500 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 AL844908.2-201ENST00000609461 460 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 AC018529.1-201ENST00000613063 361 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 AC007431.3-201ENST00000623221 587 ntBASIC18.29■□□□□ 0.52
LRCH3Q96II8 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LRCH3Q96II8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
LRCH3Q96II8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.28■□□□□ 0.52
LRCH3Q96II8 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LRCH3Q96II8 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms