Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 CR383656.12-201ENST00000549567 513 ntBASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 AL008721.1-201ENST00000609964 604 ntBASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 RNU1-129P-201ENST00000384064 167 ntBASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 PIN1P1-201ENST00000412108 996 ntBASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AC027369.6-201ENST00000525520 931 ntBASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 U1.21-201ENST00000580816 167 ntBASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AL031055.1-201ENST00000606362 631 ntBASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AC025048.6-201ENST00000634326 1161 ntBASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.21■□□□□ 0.03
SNRNP40Q96DI7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SNRNP40Q96DI7 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 MRPS18AP1-201ENST00000414458 589 ntBASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 AC009118.2-201ENST00000613275 655 ntBASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 AL662799.1-202ENST00000614205 422 ntBASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 LINC00304-203ENST00000565008 1864 ntBASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.2■□□□□ 0.02
SNRNP40Q96DI7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms