Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 AL022342.1-201ENST00000400363 863 ntBASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 HCG4-201ENST00000418983 998 ntBASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CTHRC1Q96CG8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CTHRC1Q96CG8 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CTHRC1Q96CG8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CTHRC1Q96CG8 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CTHRC1Q96CG8 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CTHRC1Q96CG8 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 RHOQP3-201ENST00000437982 621 ntBASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 HLA-J-202ENST00000469281 1241 ntBASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 AC120114.3-201ENST00000611923 658 ntBASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CTHRC1Q96CG8 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 HCG11-201ENST00000411553 5696 ntBASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 SLC25A1P1-201ENST00000528351 927 ntBASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 AC096734.2-201ENST00000562054 433 ntBASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 AC106730.1-201ENST00000566722 1090 ntBASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 AC006538.1-201ENST00000567905 1585 ntBASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 HLA-A-202ENST00000376806 1854 ntBASIC15.69■□□□□ 0.1
CTHRC1Q96CG8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms